G309626


Basic Information

Item Value
gene id G309626
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 1085588 ~ 1088166 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU351957
AAAAGTTGAGTTTATTATGGAAATTGAAAAATAAATGCAAAGGAGCCAAAACCTGTTTGTCAAATTAACTGGTAATGTGAAAATTCAGTTTTTTGTGCAGCACATTTGTGCACAGTTTATGCAAATGGACACACTTTACACATACAAAAGCATCAAGGAAGAACAATCAAACCTCTATCCCACCATGAAAAGAAACACGAAAAAGACTTGTAACAAAACAATGCAACATATTTTCTATTTTTGTTTTAGATTTTACACCATCTAAACATGAGCACCATAAAATCATAGTCCGTGCAACGGTAAACCGCATCCCAGAAAAATAAATTCATACTGCTGGTTTAAGGCATTTGTACCCTATACCATGTATTTCATATGAACGCTTCCATTTTTTGAGTTTGAACGGCTAATGTATACTGGTAATGCATGGTTGTACAAATGTTTCCAAATCATGTAACACAAGATCATTAGAAAGCATCAGATGTTGTCTTGTGTAACGTCACATATGATCATTTATTCATGACGAAGATGAAACTCTGTTTTTGTTTTTCAAACCATACTTTACAACAAAAGAGAGAGAGAGCTTATTTACATACAGGGAATTTTGTATCCCCGTTTGGACCAAATGTACTTGAACAAAAATCATCCATTATCTGTGGAGCAAACAGGAATGATCAATATTGAGTTTGTTTTTCTTTTGCCTTAAACTCAACTTCAACCTGATATGTTCTGGACCACTGCGCAAGTAAATGAAGGAAGTATATGGTATACTCTTCAGGTCTTGTTTTCTACTTGTGCTCACAATCTAGATCTAGGTTCTCCTCCGGGGTGCTCCAGGCCTTCTTCCAGGCACTCTTGTTCCCTCTTGAATGAATCTAGTGATGCTATCAGGGTCCTCGCCGATATCTTCAATGACTCTGGTGACTTTGGTTATAGCTGGATCCCCTTCGATAACTCTCGTAACCTTAGTTATGGTAGGCTGTCCTTGGATTACCCTGGTGACCTTTGTGATAGAAGGTTGACCCTCAATCACACGGGTAACCTTTGTAATGGACGGGGCGCTCTCCAAAACAATTTCTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU351957 True 1080 TUCP 0.38 4 1085588 1088166

Neighbor

gene id symbol gene type direction distance location
CI01000095_00914578_00997684 FREM2B, FREM2 coding downstream 87904 914578 ~ 997684 (-)
CI01000095_00790125_00813901 NA coding downstream 271372 789462 ~ 814216 (-)
CI01000095_00219520_00237347 HSPH1 coding downstream 848156 219436 ~ 237432 (-)
CI01000095_00183587_00185442 HMGB1B, HMGB1, HMGB1A coding downstream 898683 183219 ~ 186905 (-)
CI01000095_00173095_00181309 NA coding downstream 904279 173095 ~ 181309 (-)
CI01000095_01200809_01460128 NBEA, NBEAB, NBEAA coding upstream 112643 1200809 ~ 1460128 (-)
CI01000095_01537561_01538239 NA coding upstream 449380 1537546 ~ 1539065 (-)
CI01000095_01543090_01636658 DLC1, STARD13B coding upstream 454924 1543090 ~ 1636658 (-)
CI01000095_01639699_01643103 NA coding upstream 551419 1639585 ~ 1643326 (-)
CI01000095_01675024_01682552 NA coding upstream 585795 1673961 ~ 1682780 (-)
G309710 NA non-coding downstream 17265 1067935 ~ 1068323 (-)
G309684 NA non-coding downstream 20841 1064180 ~ 1064747 (-)
G309692 NA non-coding downstream 59689 1025662 ~ 1025899 (-)
G309662 NA non-coding downstream 147481 937273 ~ 938107 (-)
G309657 NA non-coding downstream 155821 910338 ~ 929767 (-)
G309622 NA non-coding upstream 8058 1096224 ~ 1135455 (-)
G309719 NA non-coding upstream 16619 1104785 ~ 1130450 (-)
G309805 NA non-coding upstream 173788 1261954 ~ 1292007 (-)
G309809 NA non-coding upstream 526302 1614468 ~ 1616033 (-)
G309928 NA non-coding upstream 650852 1739018 ~ 1739223 (-)
G309753 NA other upstream 90431 1178597 ~ 1181758 (-)
G309815 NA other upstream 1575164 2663330 ~ 2731704 (-)
G310207 NA other upstream 2103932 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 2442746 3528463 ~ 3539055 (-)
G311036 NA other upstream 3271495 4357325 ~ 4362626 (-)

Expression


Co-expression Network