XLOC_010999 (arhgap33)


Basic Information

Item Value
gene id XLOC_010999
gene name arhgap33
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44788331 ~ 44878255 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021495
GAGAGAATACACACATCAACACCAGGAGAAAATGCAGCGAAGAGTCACATTGTCAGGAGCCCATTGGGTTCGGAAATGCGCCATGTTTGTGAGAACGATGAGCCTGGCAGACATGTCCGGTTTCTTGCCCAGGGGAGAGCAGCTGGCAATAAAGGCTCGGAGCACTGATAATCTGGACAGTTCAGGGGAGCCTGGGACCCGATCGGTGGGCACCACTGCCAACTTGAAGGGGAAGATGAGCAAAAGGCTTTCTGTTGTGAAAGGTCACTTCCCCAAGCTTGTTGACTGTGCCCACTTTCACTACGAAAATGTGGACTTCGGTTCTATTGAGCTTCAGTTTGCCAACGAGCAGAGCGATGCCAGCTGGACCTCGGGCAGTGCCAAAGATCTGGTTTTCCTCGTGCAGGTGTCCTGCCAGGGTAAGACGTGGATGGTGCGGCGTTCGTATGAAGAGTTTCGGACGCTGGATGCCCACCTGCATCAGTGCATTTATGACCGCCGCTACTCGCAGCTCTTAGCACTGCCTGCCCTTTGCGAGATCGGAGACCGGCTGGAGATCCTAACACCACTGTTGTCAGAGTATCTAAACCGTCTCACCATGATTGTGGACAATAAGCTGAACTGTGGGCCGGTTCTCACTTGGATGGAGATTGACAACCATGGCAACAGGTTCCTGCTGAAAGAGGAAGCATCTTTAAACGTCCCTGCCATCGCCGCAGCTCACGTCATCAAGCGCTACACTGCTCAGGCTAGCGATGAGATCTCCATTGAGGTTGGTGATATTTTGTCAGTGATTGACATGCCGCCCAAAGAGGACACTACATGGTGGAGAGGAAAGCATGGATTTCAGGTTGGCTTCTTTCCCAGTGAATGTGTGGAGTTAATCAATGAGAAGATGCCGCAGTCGGTCAGCGCTCCTGTCAGTAAGCAAGTGTCCAAGAAACACGGTAAGCTGATGGGCTTCCTGCGCACCTTCATGAAGTCCAGACCCACCAAACAGAAGCTGAAGCAGAGAGGAATCCTGAAGGAACGAGTGTTCGGCTGCGACCTCGGCGAGCATCTGCTCAACTCTGGCCTAGATGTGCCACAGGTCCTGACGAGCTGCTCAGAGTTCATAGAGAAGCACGGTGTGGTGGACGGCATTTACAGACACTCTGGTGTGTCCTCCAACATACAGAAACTCAGGCATGAGTTTGACAGTGAAAACGTTCCAGACCTGACAAAAGATGTGTACATGCAGGATATTCACTGCGTCGGCTCGCTCTGCAAACTCTACTTCCGAGAGCTGCCCAATCCATTGCTCACATACCAGCTTTACGACAAGTTTGCTGAATGTATGGGAGAAATGACGGAGGAAGAGAGAATGGTGAAAGTGCATGATGTTATCCAGCAGCTTCCTCCTCCGCATTACCGCACTTTGGAGTACCTCATCAGACACCTGGCCCATTTGGCCACCTGCAGTGCAGAGACGAACATGCACATAAAGAATCTGGCCATTGTCTGGGCCCCCAATCTGCTCAGGTCCAAAGAAATTGAGGCAGCAGGTTTAACCGGCGCAGATCCTTTTAAAGAAGTGCGCATCCAGTCTGTCGTGGTGGAGTTTCTGCTCAGCAATGTGGAAGTTCTGTTCAGTGACTCTTTCACTTCTGTCGGACGCTTCAATGCAGCACGACAGTCCCTGACCAGGCCCAAGTCGTTTGTATCCACCAGGCTCCTGTCTCTGGAGGAGGCGCAGGCTCGCACACAAGCTCCCCTTCTCCTTCAGGGATCTCCTCACCATGCTATTGGCCAGTTCCACACTGTACTGGACCTGCCTGTCGACAAAAGGAAAAGAGGGATGAAGGTGCGGAAGTCAGCGGGTGGAAGCTGGAAGACATTTTTTGCCATTGGGAAACCTGGGGCTGTAGGTCGACGCAAACCCGCCAGGATCACCTCTCTATTTCAGCCCACTACCTCTCATGCAGGTTGCAGGGTGGACAGTGTGACGCTCAGGTCTGCGAAAAGTGAGGAGTCGCTGTCCTCTCAGCACAGTGGAGCAGGTCAAGGCAAGATTCAGCGGTTACGGAGACCTCGCTCCAGCAGTGACGGTCTCTCTCTGGCTGCCTCTGTGGATCCGCAGCTCCTTCCCCAAAACTCCCCATCCAAAATCCACCCGAGCCGCTCCTACGACAGCCTGCTGCCAGAGGAGACCCGTGATGCTGATGAGGAAGAGGAAAACGAAGACGAAGAGGATGAGGAGGGTGTGTACATGCTGCCTGATTTCTCCCAGGAACCACCCTCTTCATGGATAACGGAGGATGTCATTGACTTTAGCCCAACCTTTCTGGAAGATGGGCCAATAGGGTTGGGGGGCACAGGCGGAGCTCCAAGTGGTAGAGAGTCTCCTCCTGCGGCCGCACCCCCTCCATACCGCTGTCTGAGCCATCAGGGCCACCATGCCCGCTCTGGAAGCCAGCGCTCGATCACTGAAGATCCAGACTCTGTTCTTAACCAGTCTGAAGCCGCAGCCCGCAGGAGTTTGATCCTGGCTGCAGCAGCTCCGCCTCAGCAAGTGTTCTGCCAGCACAGGCCGTCTAATGCCCCTGCAAACACAACCCAGTCGGGCGAGTCAAATTTAAGCCCGTCCCATGCCCAGACGCCAGCTCCAGCAACCTCTGCACCCCCTTCTCAGCCCCCTCAGGAAAGGCGCTCCTTTACACGTAAAGTGGTTCATGCACTTTCACCAAAAGCGCCAAAATCTCCTCCTCTGGACATCTCGGATCCCATCGCCATCAGTGTTCCTGCCAAGGTTTTGGAAATGATTGGTGGACGAGCTGGTGAATTGCAATCTGGACTTCCAAGCAGTGGACCTCCTCAGCCACCCCAGATGATATCTATGCTCCTGAGGTCATGTGACTTTCAGCTCACTGAAAGCTGCCAGCAAGAGCTCAGCAGTAAGTTGGGCCCCATCGCCAAGATCAAGGGTCCAAgtaTCTTGGGTCCTACTGGTGTTCCCCTTCCATCACAACAGCCCCCTGCTCCTCCTCCCAAGAATCCTGCACGCCTCATGGCTCTAGCTCTGACTGAAAGTGCCAACAAGGCACTGCGGCAAGGTGCCTCCCCTCCATATCGCCCCCGTCAGAGTGCAGCCTCCCCTGAGAAAGACATCCGCTTTCAGAGGTCACTCTCTGCTGATGCAGGAGCTCTGCTGTCCTCTGATCCTAATCAGATCTATTCCACAGTGCGACCCTTATCTGTGTGGAAGACTGAAGGTGGTGATGGGGATGATGAAGAGGACGATGAAGGAGCTGCCGCTGAAAAGGCTGCAGACAAATCACATGGTACAGAGCCAAGATCTCCCCCTGGGCAGGACATTGGGACTCTGTCTTCTAACAGCTCAGTCTCTGACTCTGGGACAACCAATTCTGAGTTATCAGCTGCCAGTTCCTCTGAGGACAATGAGCGAACCCCAAGCCCCATTTACAAGAATGAAGAACCAACTTCTCCACCACAGCCCTTAATATCCAGCCCGCCCTCCTC
>TCONS_00021496
GAGAGAATACACACATCAACACCAGGAGAAAATGCAGCGAAGAGTCACATTGTCAGGAGCCCATTGGGTTCGGAAATGCGCCATGTTTGTGAGAACGATGAGCCTGGCAGACATGTCCGGTTTCTTGCCCAGGGGAGAGCAGCTGGCAATAAAGGCTCGGAGCACTGATAATCTGGACAGTTCAGGGGAGCCTGGGACCCGATCGGTGGGCACCACTGCCAACTTGAAGGGGAAGATGAGCAAAAGGCTTTCTGTTGTGAAAGGTCACTTCCCCAAGCTTGTTGACTGTGCCCACTTTCACTACGAAAATGTGGACTTCGGTTCTATTGAGCTTCAGTTTGCCAACGAGCAGAGCGATGCCAGCTGGACCTCGGGCAGTGCCAAAGATCTGGTTTTCCTCGTGCAGGTGTCCTGCCAGGGTAAGACGTGGATGGTGCGGCGTTCGTATGAAGAGTTTCGGACGCTGGATGCCCACCTGCATCAGTGCATTTATGACCGCCGCTACTCGCAGCTCTTAGCACTGCCTGCCCTTTGCGAGATCGGAGACCGGCTGGAGATCCTAACACCACTGTTGTCAGAGTATCTAAACCGTCTCACCATGATTGTGGACAATAAGCTGAACTGTGGGCCGGTTCTCACTTGGATGGAGATTGACAACCATGGCAACAGGTTCCTGCTGAAAGAGGAAGCATCTTTAAACGTCCCTGCCATCGCCGCAGCTCACGTCATCAAGCGCTACACTGCTCAGGCTAGCGATGAGATCTCCATTGAGGTTGGTGATATTTTGTCAGTGATTGACATGCCGCCCAAAGAGGACACTACATGGTGGAGAGGAAAGCATGGATTTCAGGTTGGCTTCTTTCCCAGTGAATGTGTGGAGTTAATCAATGAGAAGATGCCGCAGTCGGTCAGCGCTCCTGTCAGTAAGCAAGTGTCCAAGAAACACGGTAAGCTGATGGGCTTCCTGCGCACCTTCATGAAGTCCAGACCCACCAAACAGAAGCTGAAGCAGAGAGGAATCCTGAAGGAACGAGTGTTCGGCTGCGACCTCGGCGAGCATCTGCTCAACTCTGGCCTAGATGTGCCACAGGTCCTGACGAGCTGCTCAGAGTTCATAGAGAAGCACGGTGTGGTGGACGGCATTTACAGACACTCTGGTGTGTCCTCCAACATACAGAAACTCAGGCATGAGTTTGACAGTGAAAACGTTCCAGACCTGACAAAAGATGTGTACATGCAGGATATTCACTGCGTCGGCTCGCTCTGCAAACTCTACTTCCGAGAGCTGCCCAATCCATTGCTCACATACCAGCTTTACGACAAGTTTGCTGAATGTATGGGAGAAATGACGGAGGAAGAGAGAATGGTGAAAGTGCATGATGTTATCCAGCAGCTTCCTCCTCCGCATTACCGCACTTTGGAGTACCTCATCAGACACCTGGCCCATTTGGCCACCTGCAGTGCAGAGACGAACATGCACATAAAGAATCTGGCCATTGTCTGGGCCCCCAATCTGCTCAGGTCCAAAGAAATTGAGGCAGCAGGTTTAACCGGCGCAGATCCTTTTAAAGAAGTGCGCATCCAGTCTGTCGTGGTGGAGTTTCTGCTCAGCAATGTGGAAGTTCTGTTCAGTGACTCTTTCACTTCTGTCGGACGCTTCAATGCAGCGTCACGAGGGGCCGAACACAAGATCTCACGGCAGCCACGAACACGCCTGGTCAGTCTTCAGGAGGCCAGGGACGAGTCCTGTTTCTCGGACCCCTCTGATCTGGACCCAGAGCTGCGCCGCTATTCTATGATTTGAGATACAGACTAACTCTCTACAGTGGACCTTGACTCAAATCACAGTCTGTTCTGCtgg
>TCONS_00021497
GAGCCTTCATACAGATCAAGAATATTTGAAAAAGTGTTGTATCAATAGTGATTATTTTGTTGTCCTTCATTGGCCGTTTCTCTGTTTCAGAGGTAGATCTGATGAGCTCCAAACCTGGTGCTACCAACACAACTGGACCTTCCTCTCCAACATCAGTGTCCAAGAAACACGGTAAGCTGATGGGCTTCCTGCGCACCTTCATGAAGTCCAGACCCACCAAACAGAAGCTGAAGCAGAGAGGAATCCTGAAGGAACGAGTGTTCGGCTGCGACCTCGGCGAGCATCTGCTCAACTCTGGCCTAGATGTGCCACAGGTCCTGACGAGCTGCTCAGAGTTCATAGAGAAGCACGGTGTGGTGGACGGCATTTACAGACACTCTGGTGTGTCCTCCAACATACAGAAACTCAGGTGAGTGTATGTTAATGTTCTGTTCAGGGGTTTGTACACTTTATTATGGAACTGTGTAAATAACAGTGAGCCTTAAAGTCAACTAAAAACAAAATTTAGACCGAAGATTATTTCATTTACTGATGTACAAGTTTTAATAGTATGTGTCTCCTACACTGCCCTGTAcaattaacccttgtgtattgttcagagTTCATGGCTGTTTTTCGCCCCATTTACTCCgctataaccattttttttattgtaaagctgtgacaccatataatcatgcattcttgattgttggtggtttttcctgttgggaagaggtacaacTTTTACTGTTCACCATCATAGCTCAccgtttactaatgcattattaacatccaaatttatacttgttaacattagttaaaactccggtttcccccacaagtccaaaaacattttGTATAGGtcaactgggtaagctaaattgtccgtagtgtatgtgtgtatgtgagtgtgtatggtagggatgggaagattaaccgatatgtatcgatacgcggtcatgcgcgtgcacgatgcgagtgcatcggtagagcagcagaggatgaatgaaattttggaagcaaattgagatgcatcggtttttgcgagatgcatcggtttttccaagatacagcttatatttttaagatataatgtattttttatttattagcaagtgttgtcaacctgtttttggcgcattatttaatcgacctacataaagtatgccttagcaacggacttgcggatgtgtacacttacactacaactcagagtatcaggtgtgcggatgaagctagtggagcgccctcagaaagcgtgagaagcaaaacaaatattttattccccactgagttttaaatctaaagtatggcaacattatggattttgcAAAAAAGATGGACGACTTtttaggacagatgcaatttgcaaaatgtgccgcgcatctgtaaaatacacgggcagtacgactaatctgaaatctcacttgaagcggcgacacggtgttgttgtggaagcatcttccagtgttccttcatccccggcttcctgctctgcttcaactgtagctaccagctccaaaagtggtgagaaaagcattgcaagttttctccatgcgcaacagttctgctcgctctacgccaataacgaatgctattgcattgttcatctgcaaagatattcagcctagtgtcacggagaacaaaggttttaaacacctcctcctgttaatttttatttatttatatttttattagcctgttgtttacagtgacagtgatgtttcaaagcagcataacactgctagttcacgaccttaggttttgaatattcagtggcacaatatatctttgtaaaacttgttttcatagttgaaaggttaaatcacaattcttgttgtgcaatgctaaacctttatgttgaaagagtgcaaatatatacatttataatatatattgcacttatacattctgtttatcttgaaaatacttaaataatatgtgctatgggttctaaaatggccctctactgtaaactgacactctggctctgagagaaaagccagtttgtaaaaaaagtcttggttttgctttgttaataaataatcaaactcattcaatggcacagcatcctttcttacatcatctcataaacttgatccaattagttagtgctgaattatcgcattgtatcgtgatatgggtgtgaatcgtatcgtgttgcatcgcaatatgtcacaaatgtatcgctaatatatcggatcgtattctttgtatcgagatgcgtatcggatcggcattatagcttagatgcccaaccctagtgtatggatgtttcctagtaatgggtagcagctggaagggcatctgctgtgtaaaacacatgctggataagttggcggttcattccactctggctaccccagattaataaagggactaagccgaaaagaaaatgaataaatgaatgaataacagtgTACCACAGGACTTtttattaactagcatgaacacatactgtcataaatgtattgttcatgttagttaatgcatgaactaataaaaccttgttgtaaagtgttacccaaacatTTAAGGTACTGTACAAGTCATGTTTAtaatgtagtgtagtgtagttgaTGCTGTTTATATCTGACATATGACAGTGACTTCTGTTCTCTTGAATTTCATCCCGATCAGGCATGAGTTTGACAGTGAAAACGTTCCAGACCTGACAAAAGATGTGTACATGCAGGATATTCACTGCGTCGGCTCGCTCTGCAAACTCTACTTCCGAGAGCTGCCCAATCCATTGCTCACATACCAGCTTTACGACAAGTTTGCTGTAAGTCATTCTGTCTCTAGCAGATATAAGACCAAGGGATGATGTACATTTCACTTATGAAAACGCATTACAAGAGAAAAGTTTTTCTAAATTGCAATAATAATTCACTCTATTGCTTTTGCTGTATTAATTACTGATTAATATATGCAGCCTAGGCTATGTTTTAAAATGACTAAGCAAACTGTGTCCTTGTCTGTCCAGGAATGTATGGGAGAAATGACGGAGGAAGAGAGAATGGTGAAAGTGCATGATGTTATCCAGCAGCTTCCTCCTCCGCATTACCGGTAAACCCAACACTGGCACTGAGGTGAAACTGCAGAGTGACAGGAAGAGCAGTGTTTTCTGACCAtaagctgtgtgtttgtgtctctttCAGCACTTTGGAGTACCTCATCAGACACCTGGCCCATTTGGCCACCTGCAGTGCAGAGACGAACATGCACATAAAGAATCTGGCCATTGTCTGGGCCCCCAATCTGCTCAGGTAACTCCTATGTCTATCTGTAAATATGAACTGacagatgttttgttttgtattttggcttgttttgtttagttttgtgttttta
>TCONS_00021498
ACACATCAACACCAGGAGAAAATGCAGCGAAGAGTCACATTGTCAGGAGCCCATTGGGTTCGGAAATGCGCCATGTTTGTGAGAACGATGAGCCTGGCAGACATGTCCGGCTCGGAGCACTGATAATCTGGACAGTTCAGGGGAGCCTGGGACCCGATCGGTGGGCACCACTGCCAACTTGAAGGGGAAGATGAGCAAAAGGCTTTCTGTTGTGAAAGGTCACTTCCCCAAGCTTGTTGACTGTGCCCACTTTCACTACGAAAATGTGGACTTCGGTTCTATTGAGCTTCAGTTTGCCAACGAGCAGAGCGATGCCAGCTGGACCTCGGGCAGTGCCAAAGATCTGGTTTTCCTCGTGCAGGTGTCCTGCCAGGGTAAGACGTGGATGGTGCGGCGTTCGTATGAAGAGTTTCGGACGCTGGATGCCCACCTGCATCAGTGCATTTATGACCGCCGCTACTCGCAGCTCTTAGCACTGCCTGCCCTTTGCGAGATCGGAGACCGGCTGGAGATCCTAACACCACTGTTGTCAGAGTATCTAAACCGTCTCACCATGATTGTGGACAATAAGCTGAACTGTGGGCCGGTTCTCACTTGGATGGAGATTGACAACCATGGCAACAGGTTCCTGCTGAAAGAGGAAGCATCTTTAAACGTCCCTGCCATCGCCGCAGCTCACGTCATCAAGCGCTACACTGCTCAGGCTAGCGATGAGATCTCCATTGAGGTTGGTGATATTTTGTCAGTGATTGACATGCCGCCCAAAGAGGACACTACATGGTGGAGAGGAAAGCATG

Function

symbol description
arhgap33 Predicted to enable GTPase activator activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within protein transport and signal transduction. Orthologous to human ARHGAP33 (Rho GTPase activating protein 33).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-121105-12 Predicted to enable GTPase activator activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within protein transport and signal transduction. Orthologous to human ARHGAP33 (Rho GTPase activating protein 33).

Ensembl:

ensembl_id ENSDARG00000011333

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021495 False 3519 mRNA 0.54 23 44788331 44878255
TCONS_00021496 False 1861 mRNA 0.52 18 44796996 44878255
TCONS_00021497 False 3336 mRNA 0.40 3 44801129 44813252
TCONS_00021498 True 797 mRNA 0.53 9 44814729 44878245

Neighbor

gene id symbol gene type direction distance location
XLOC_010998 zmp:0000000951 coding downstream 24518 44754799 ~ 44763813 (-)
XLOC_010997 si:ch211-151m7.6 coding downstream 78499 44679659 ~ 44709832 (-)
XLOC_010996 dcaf13 coding downstream 114480 44653266 ~ 44673851 (-)
XLOC_010995 NA coding downstream 139278 44435453 ~ 44649053 (-)
XLOC_010994 rims2a coding downstream 388996 44338805 ~ 44399335 (-)
XLOC_011001 rbm42 coding upstream 3574 44881829 ~ 44900306 (-)
XLOC_011002 ncam3 coding upstream 41757 44920012 ~ 44945224 (-)
XLOC_011003 sult2st3 coding upstream 105358 44983613 ~ 45001842 (-)
XLOC_011004 NA coding upstream 134659 45012914 ~ 45014480 (-)
XLOC_011005 BX511252.1 coding upstream 140169 45018424 ~ 45018540 (-)
XLOC_010626 CR392024.2 misc downstream 23893156 20895112 ~ 20895175 (-)
XLOC_010993 NA non-coding downstream 492782 44180775 ~ 44295549 (-)
XLOC_010992 NA non-coding downstream 628466 44154484 ~ 44159865 (-)
XLOC_010988 oxr1a non-coding downstream 1045988 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding downstream 1232752 43555464 ~ 43555579 (-)
XLOC_010987 NA non-coding downstream 1419460 43358925 ~ 43368871 (-)
XLOC_011010 FP085399.2 non-coding upstream 226358 45104613 ~ 45106574 (-)
XLOC_011011 FP085399.3 non-coding upstream 252666 45130921 ~ 45134479 (-)
XLOC_011012 FP085399.5 non-coding upstream 262603 45140858 ~ 45144372 (-)

Expression


Co-expression Network