XLOC_011004


Basic Information

Item Value
gene id XLOC_011004
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45012914 ~ 45014480 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022237
TAAAAAGGGGTGTTCATTCTCTCATGAAAACAGCTGAATAAAAGAGTTTAGCCCACTGGAGTTTCTCTCCAGCATTATGTGCCATTTTCTCACCTGTATCCTATTACCTGTGCAGTAGAGGCTCTTTATCAGACTGATGTCTTGGATGTTGCTGACGAGGAATCAAAGCAGCAATTAAACTCTCCAGCCATCTAATGGAGCAGGTTTTTTGCAAGCTGTgcaattttatttcaaaatatcttctctttagTTTTAAGGGCTACTATTAACTAAACTGTTGCAGACAAATATGTTGAAACATAGTTTTgatcttttgattttttttttttttttttttatgttacagcggtattgttacatttagttttgctgttacacatttgttttgttgtcagtttttactctttttttttttttaactcctgtaaatattcatttgatctgttgtttttctttcagatattttttatttactttgaacATTTAACAaactcttttctttcttttgcattattagtttttattgcaGAACTTGTtgcttttgaatgttttttaaactttCTTTAGGATGTTTTTGCATTTATCTAAAGATGATTTTCTTGGGGTTTTTTTAACAAAGTTttgtttgttacaatgtattCTCATTCTGTAAATGTTTCAGACTTTCTTTTGAACTTCTGACAAACTCCTTTAAACACTTTTAGTACATTTAGTTTTGCTgataaacttttgttttgtcgTCAGTTTTTACTCTTCTAACAGACTCCTGTAAATGTTCTGATCTGTTTCTTgttctttaaatgttttctttggtTTCTTTTGAAATTCTAAAACACTCTATTTATCTGACTCTTGatttatttagcattattagtttttttttgtttgcataacttGTTGCTATTGaatgttttcaaactttttcaatCTTTAAAACTTGTCTTGTGGATAtttttttcttgctttgtttATTTAAGAAAGTTTTGTTGTTATAATATTTTCCCATTCTTCAAATGCTTTCAGACTTTCTTTTGAACTTTAATTCATTCAAACACTTAATATTTAATAGActctttatttatctttttttttttttttgcacaacattTTGCTAACAAatgtttttcaaacttttttttaatctttacaaCTTATCTTTTGatctttattttcttaatttgtttttagGAACGTTTTTTTACAATAAGTCTCATGCTTCAAatgtttttagactttttttcttttggtcTTCTAACAAACTACTTTAATCATGTttgttacatttagttttgttgactttttgttttgttgtcaaTTTTACTCTTTCTGTAGACTCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022237 True 1338 lncRNA 0.27 2 45012914 45014480

Neighbor

gene id symbol gene type direction distance location
XLOC_011003 sult2st3 coding downstream 11072 44983613 ~ 45001842 (-)
XLOC_011002 ncam3 coding downstream 67690 44920012 ~ 44945224 (-)
XLOC_011001 rbm42 coding downstream 112608 44881829 ~ 44900306 (-)
XLOC_010999 arhgap33 coding downstream 134659 44788331 ~ 44878255 (-)
XLOC_011000 arhgap33 coding downstream 135595 44873544 ~ 44877319 (-)
XLOC_011005 BX511252.1 coding upstream 3944 45018424 ~ 45018540 (-)
XLOC_011006 tmem147 coding upstream 4969 45019449 ~ 45042236 (-)
XLOC_011007 gapdhs coding upstream 30162 45044642 ~ 45069882 (-)
XLOC_011008 si:rp71-77l1.2 coding upstream 63113 45077593 ~ 45080812 (-)
XLOC_011009 si:rp71-77l1.1 coding upstream 73330 45087810 ~ 45098706 (-)
XLOC_010626 CR392024.2 misc downstream 24117739 20895112 ~ 20895175 (-)
XLOC_010993 NA non-coding downstream 717365 44180775 ~ 44295549 (-)
XLOC_010992 NA non-coding downstream 853049 44154484 ~ 44159865 (-)
XLOC_010988 oxr1a non-coding downstream 1270571 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding downstream 1457335 43555464 ~ 43555579 (-)
XLOC_010987 NA non-coding downstream 1644043 43358925 ~ 43368871 (-)
XLOC_011010 FP085399.2 non-coding upstream 90133 45104613 ~ 45106574 (-)
XLOC_011011 FP085399.3 non-coding upstream 116441 45130921 ~ 45134479 (-)
XLOC_011012 FP085399.5 non-coding upstream 126378 45140858 ~ 45144372 (-)
XLOC_011015 FP085399.6 non-coding upstream 159966 45174446 ~ 45174560 (-)

Expression


Co-expression Network