Fish Transcriptome and Expression Database

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model fish

XLOC_011005 (BX511252.1)

Basic Information

Item	Value
gene id	XLOC_011005
gene name	BX511252.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	45018424 ~ 45018540 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021503
ggccACAGCCACAtcatcctgcagcccaagaccagttactcactaaAGCGAAGCAAGGCTAAGCCTGATCATTACCTGGATGGTAGACCTCATGTGAAAAATAGGTTGCTGTTGaag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107748

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021503	True	117	rRNA	0.49	1	45018424	45018540

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011004	NA	coding	downstream	3944	45012914 ~ 45014480 (-)
XLOC_011003	sult2st3	coding	downstream	16582	44983613 ~ 45001842 (-)
XLOC_011002	ncam3	coding	downstream	73200	44920012 ~ 44945224 (-)
XLOC_011001	rbm42	coding	downstream	118118	44881829 ~ 44900306 (-)
XLOC_010999	arhgap33	coding	downstream	140169	44788331 ~ 44878255 (-)
XLOC_011006	tmem147	coding	upstream	909	45019449 ~ 45042236 (-)
XLOC_011007	gapdhs	coding	upstream	26102	45044642 ~ 45069882 (-)
XLOC_011008	si:rp71-77l1.2	coding	upstream	59053	45077593 ~ 45080812 (-)
XLOC_011009	si:rp71-77l1.1	coding	upstream	69270	45087810 ~ 45098706 (-)
XLOC_011010	FP085399.2	coding	upstream	86073	45104613 ~ 45106574 (-)
XLOC_010626	CR392024.2	misc	downstream	24123249	20895112 ~ 20895175 (-)
XLOC_010993	NA	non-coding	downstream	722875	44180775 ~ 44295549 (-)
XLOC_010992	NA	non-coding	downstream	858559	44154484 ~ 44159865 (-)
XLOC_010988	oxr1a	non-coding	downstream	1276081	43417632 ~ 43742343 (-)
XLOC_010989	LO018541.1	non-coding	downstream	1462845	43555464 ~ 43555579 (-)
XLOC_011011	FP085399.3	non-coding	upstream	112381	45130921 ~ 45134479 (-)
XLOC_011012	FP085399.5	non-coding	upstream	122318	45140858 ~ 45144372 (-)
XLOC_011015	FP085399.6	non-coding	upstream	155906	45174446 ~ 45174560 (-)
XLOC_011016	FP085399.4	non-coding	upstream	168133	45186673 ~ 45193152 (-)

Expression

Co-expression Network