XLOC_011008 (si:rp71-77l1.2)


Basic Information

Item Value
gene id XLOC_011008
gene name si:rp71-77l1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45077593 ~ 45080812 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021507
ATTCATTGACCATCAGGACAGCAGAGTACAGCGGTGCATTCATCtccatacaaagaaaacaaaagcagAAGAATGGATCCCAGGCTGAATTCTCCTGAGAAATCTCAATTTCCACCACCACCTAGCTACCAGGACAGTCCACCTCCATATACTCCATCCTATCCAGGCCAGTCGGTCCCACAGGCCCCCTATGTTCAAGGGCCACATCCAAGACAAGCGGTGGTCTCGGTGCAGCCTGCAGTTTTTGTGGCTGCTGCTCCATTGCAAACTCCACCGCCGGATTACCTGTGTTACTCCATCTTCAACTTGTTTTGCTGCTGTTTCCCTCTGGGCATCGCAGCGCTGATATTTTCCGTCTCTACTTGGAATGCCAATTCCACAGGACAGCGTGAATTGGCAGAGAAGAACTCCAAAACGGCGCGAACCCTGAACAACTTTGGTGTTGGTCTCGGCATCGTTTTTATTATTATGGCGATTGTCTTAAGGGTTATAATACATTAAATGCATGTAAAAGTATCCATATCCATAAATAAGCTGCTCTCATTGTTGGGTGCAGAATTTGATTCCCTTCATTTTAA

Function

symbol description
si:rp71-77l1.2 Predicted to be integral component of membrane. Predicted to be active in membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-184 Predicted to be integral component of membrane. Predicted to be active in membrane.

Ensembl:

ensembl_id ENSDARG00000097752

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021507 True 578 mRNA 0.47 2 45077593 45080812

Neighbor

gene id symbol gene type direction distance location
XLOC_011007 gapdhs coding downstream 7711 45044642 ~ 45069882 (-)
XLOC_011006 tmem147 coding downstream 35357 45019449 ~ 45042236 (-)
XLOC_011005 BX511252.1 coding downstream 59053 45018424 ~ 45018540 (-)
XLOC_011004 NA coding downstream 63113 45012914 ~ 45014480 (-)
XLOC_011003 sult2st3 coding downstream 75751 44983613 ~ 45001842 (-)
XLOC_011009 si:rp71-77l1.1 coding upstream 6998 45087810 ~ 45098706 (-)
XLOC_011010 FP085399.2 coding upstream 23801 45104613 ~ 45106574 (-)
XLOC_011011 FP085399.3 coding upstream 50109 45130921 ~ 45134479 (-)
XLOC_011012 FP085399.5 coding upstream 60046 45140858 ~ 45144372 (-)
XLOC_011013 si:ch73-343g19.4 coding upstream 68543 45149355 ~ 45152169 (-)
XLOC_010626 CR392024.2 misc downstream 24182418 20895112 ~ 20895175 (-)
XLOC_010993 NA non-coding downstream 782044 44180775 ~ 44295549 (-)
XLOC_010992 NA non-coding downstream 917728 44154484 ~ 44159865 (-)
XLOC_010989 LO018541.1 non-coding downstream 1522014 43555464 ~ 43555579 (-)
XLOC_011015 FP085399.6 non-coding upstream 93634 45174446 ~ 45174560 (-)
XLOC_011016 FP085399.4 non-coding upstream 105861 45186673 ~ 45193152 (-)

Expression


Co-expression Network