Gene
RNA
| Item | Value |
|---|---|
| gene id | G310884 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000095 |
| NCBI id | null |
| chromosome length | 6456983 |
| location | 4047636 ~ 4049370 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU353419 | True | 1703 | lncRNA | 0.46 | 2 | 4047636 | 4049370 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000095_03937755_03971616 | NA | coding | downstream | 75216 | 3936017 ~ 3972420 (-) |
| CI01000095_03763628_03856780 | NA | coding | downstream | 190856 | 3762950 ~ 3856780 (-) |
| CI01000095_03720995_03743990 | NA | coding | downstream | 303474 | 3720553 ~ 3744162 (-) |
| CI01000095_03645380_03674104 | NA | coding | downstream | 373416 | 3645279 ~ 3674220 (-) |
| CI01000095_03598784_03614858 | NA | coding | downstream | 432778 | 3598439 ~ 3614858 (-) |
| CI01000095_04055806_04081892 | NA | coding | upstream | 6192 | 4055562 ~ 4081892 (-) |
| CI01000095_04255180_04256500 | MON1A | coding | upstream | 205759 | 4255129 ~ 4256500 (-) |
| CI01000095_04262102_04292135 | NGEF | coding | upstream | 212425 | 4261795 ~ 4292135 (-) |
| CI01000095_04320760_04332337 | ITM2CA | coding | upstream | 269872 | 4319242 ~ 4332443 (-) |
| CI01000095_04332781_04341944 | CAB39L, CAB39L.L, CAB39, CAB39.L | coding | upstream | 283389 | 4332759 ~ 4344968 (-) |
| G310918 | NA | non-coding | downstream | 51930 | 3995396 ~ 3995706 (-) |
| G310862 | NA | non-coding | downstream | 154933 | 3892358 ~ 3892703 (-) |
| G310857 | NA | non-coding | downstream | 164665 | 3882814 ~ 3882971 (-) |
| G310777 | NA | non-coding | downstream | 406577 | 3573620 ~ 3641059 (-) |
| G310782 | NA | non-coding | downstream | 456870 | 3584377 ~ 3590766 (-) |
| G310976 | NA | non-coding | upstream | 56733 | 4106103 ~ 4108125 (-) |
| G310982 | NA | non-coding | upstream | 74186 | 4123556 ~ 4127020 (-) |
| G310999 | NA | non-coding | upstream | 129812 | 4179182 ~ 4179564 (-) |
| G311011 | NA | non-coding | upstream | 170084 | 4219454 ~ 4220026 (-) |
| G310968 | NA | non-coding | upstream | 172403 | 4221773 ~ 4222182 (-) |
| CI01000095_03528759_03538412 | NA | other | downstream | 510403 | 3528463 ~ 3539055 (-) |
| G310207 | NA | other | downstream | 824968 | 3192098 ~ 3222668 (-) |
| G309815 | NA | other | downstream | 1315932 | 2663330 ~ 2731704 (-) |
| G309753 | NA | other | downstream | 2865878 | 1178597 ~ 1181758 (-) |
| G309626 | NA | other | downstream | 2959470 | 1085588 ~ 1088166 (-) |
| G311036 | NA | other | upstream | 310291 | 4357325 ~ 4362626 (-) |
| G311701 | NA | other | upstream | 1099655 | 5149025 ~ 5154494 (-) |
| CI01000095_05211660_05234474 | NA | other | upstream | 1134223 | 5211587 ~ 5237234 (-) |
| CI01000095_05604829_05607020 | NA | other | upstream | 1556843 | 5603542 ~ 5607020 (-) |
| G312335 | NA | other | upstream | 2185015 | 6234385 ~ 6237845 (-) |
