G311023


Basic Information

Item Value
gene id G311023
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 4258317 ~ 4258593 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU353567
CCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCATGTGCTGTTTTGATTAGGACTTCGTAAATATTGTGAATTGCCACTTGTTGTAAATAATTACATGTTAAAATGCTTGTTATAGACCTTAAGGATTAATGTTCAACCACATACACTCTGAAAGATATGACAACGTCATGTAAACAACAAACACTTTTTCATGAATTCCCATGGTCGACAAGCCCGAATACTTGTCTGCAAATCCCTG

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353567 True 277 lncRNA 0.42 1 4258317 4258593

Neighbor

gene id symbol gene type direction distance location
CI01000095_04255180_04256500 MON1A coding downstream 1817 4255129 ~ 4256500 (-)
CI01000095_04055806_04081892 NA coding downstream 176425 4055562 ~ 4081892 (-)
CI01000095_03937755_03971616 NA coding downstream 285897 3936017 ~ 3972420 (-)
CI01000095_03763628_03856780 NA coding downstream 401537 3762950 ~ 3856780 (-)
CI01000095_03720995_03743990 NA coding downstream 514155 3720553 ~ 3744162 (-)
CI01000095_04262102_04292135 NGEF coding upstream 3202 4261795 ~ 4292135 (-)
CI01000095_04320760_04332337 ITM2CA coding upstream 60649 4319242 ~ 4332443 (-)
CI01000095_04332781_04341944 CAB39L, CAB39L.L, CAB39, CAB39.L coding upstream 74166 4332759 ~ 4344968 (-)
CI01000095_04829891_04901481 ROBO2 coding upstream 571298 4829891 ~ 4901481 (-)
CI01000095_04923302_04930194 NA coding upstream 664700 4923293 ~ 4930369 (-)
G311021 NA non-coding downstream 3708 4254408 ~ 4254609 (-)
G310969 NA non-coding downstream 13222 4241930 ~ 4245095 (-)
G310968 NA non-coding downstream 36135 4221773 ~ 4222182 (-)
G311011 NA non-coding downstream 38291 4219454 ~ 4220026 (-)
G310999 NA non-coding downstream 78753 4179182 ~ 4179564 (-)
G310967 NA non-coding upstream 54348 4312941 ~ 4316939 (-)
G311033 NA non-coding upstream 91071 4349664 ~ 4349921 (-)
G311036 NA non-coding upstream 98732 4357325 ~ 4362626 (-)
G311046 NA non-coding upstream 137701 4396294 ~ 4396548 (-)
CI01000095_03528759_03538412 NA other downstream 721084 3528463 ~ 3539055 (-)
G310207 NA other downstream 1035649 3192098 ~ 3222668 (-)
G309815 NA other downstream 1526613 2663330 ~ 2731704 (-)
G309753 NA other downstream 3076559 1178597 ~ 1181758 (-)
G309626 NA other downstream 3170151 1085588 ~ 1088166 (-)
G311701 NA other upstream 890432 5149025 ~ 5154494 (-)
CI01000095_05211660_05234474 NA other upstream 925000 5211587 ~ 5237234 (-)
CI01000095_05604829_05607020 NA other upstream 1347620 5603542 ~ 5607020 (-)
G312335 NA other upstream 1975792 6234385 ~ 6237845 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnai-aau-140 NA coding NW_023493666.1 JAAXML020000359.1 582059 ~ 582132 (+)
eurasian perch (Perca fluviatilis) trnal-cag_2 NA non-coding NC_053129.1 CM020926.1 28652602 ~ 28652684 (+)
eurasian perch (Perca fluviatilis) trnai-aau_33 NA coding NC_053133.1 CM020930.1 26467147 ~ 26467220 (-)
striped catfish (Pangasianodon hypophthalmus) trnai-aau_27 NA coding NC_047622.1 CM018568.1 14906208 ~ 14906281 (-)
tiger barb (Puntius tetrazona) trnam-cau_91 NA misc NC_056707.1 CM032076.1 5441475 ~ 5441546 (+)
tiger barb (Puntius tetrazona) trnai-aau_2 NA coding NC_056704.1 CM032073.1 11972971 ~ 11973044 (+)
mexican tetra (Astyanax mexicanus) trnai-aau_27 NA misc NW_019171985.1 APWO02001583.1 113062 ~ 113135 (+)
mexican tetra (Astyanax mexicanus) trnai-aau_31 NA coding NW_019172929.1 APWO02000036.1 2486856 ~ 2486929 (+)