XLOC_011012 (FP085399.5)


Basic Information

Item Value
gene id XLOC_011012
gene name FP085399.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45140858 ~ 45144372 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021511
CTCTACATTCACTTCACTGACATTCAAAGCAACGGAGCACAGCAAAGAAAACCACAATCAAAAGAATGGATCGCAGGCAGAGAGCATCTGAGGCTGTTGTGATGTTGCAGCCTCAGCATCCACATGCATATTATCCATCCAGCTCAGGCCAGTCAGTCCAGCAAGGCCCCTACAATCAAGGGCCACTTCCAGGACAAACTGTGGTCACGATGCAGACTGAAGATTTTGAGCCCGCCGCACCACTGTCGGATCACTTGTGCTACTCCATCTTCACCATGCTTTGCTGCTGCAGTCCTCTGGGCATCGCAGCGCTGGTATTTTCCCTCTCTACCCGAAATGCCAACGGAGCTGGACACAGAGAATTAGCTGTGAGGAACTCCAAAACGGCACGCACCCTGAATAATACCGCCTGTTGTCTTGGCATTGTTTTGATTGTATTTATTGTTGTCTTTGAGTTAGTGTTACTTGAAAAACTAAAAAACCTAAATTATTTGGAAAAGAATTCCCAAAACTGAGTTGATGTCATACTGTAAAGCAAATACGcataaattacagtttttttttattttgttaaacatgtttttattttccccctatatatttatgctttgagttgcattatgggaccttttaACCATGAAAAGtgattttaagaacatttttaatagtttaaagtgatatattgtctgggttggtgttgtattttatgcaacaaaaaccttgtaataaactgctggtacattttctctttttttacagaattatttctctatatataattttttatacata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104882

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021511 True 792 processed_transcript 0.39 2 45140858 45144372

Neighbor

gene id symbol gene type direction distance location
XLOC_011011 FP085399.3 coding downstream 6379 45130921 ~ 45134479 (-)
XLOC_011010 FP085399.2 coding downstream 34284 45104613 ~ 45106574 (-)
XLOC_011009 si:rp71-77l1.1 coding downstream 42152 45087810 ~ 45098706 (-)
XLOC_011008 si:rp71-77l1.2 coding downstream 60046 45077593 ~ 45080812 (-)
XLOC_011007 gapdhs coding downstream 70976 45044642 ~ 45069882 (-)
XLOC_011013 si:ch73-343g19.4 coding upstream 4983 45149355 ~ 45152169 (-)
XLOC_011014 si:dkey-33i11.9 coding upstream 28421 45172793 ~ 45178430 (-)
XLOC_011015 FP085399.6 coding upstream 30074 45174446 ~ 45174560 (-)
XLOC_011016 FP085399.4 coding upstream 42301 45186673 ~ 45193152 (-)
XLOC_011017 fxyd1 coding upstream 58230 45202602 ~ 45225520 (-)
XLOC_010626 CR392024.2 misc downstream 24245683 20895112 ~ 20895175 (-)
XLOC_011005 BX511252.1 non-coding downstream 122318 45018424 ~ 45018540 (-)
XLOC_011004 NA non-coding downstream 126378 45012914 ~ 45014480 (-)
XLOC_010993 NA non-coding downstream 845309 44180775 ~ 44295549 (-)
XLOC_011019 FP016247.2 non-coding upstream 98009 45242381 ~ 45245742 (-)
XLOC_011023 NA non-coding upstream 648013 45792385 ~ 45795127 (-)
XLOC_011027 NA non-coding upstream 838101 45982473 ~ 45994189 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G72028 NA non-coding NC_053118.1 CM020915.1 12594584 ~ 12596659 (+)
mexican tetra (Astyanax mexicanus) G71325 NA non-coding NC_035904.1 CM008307.1 4990921 ~ 4993129 (-)