G311697


Basic Information

Item Value
gene id G311697
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5007002 ~ 5013224 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU354341
TTAGATAATGTTAATTTCAACATTTTACATTATGGAAATCAAATGTTGTTAACATTAGTTAATGCACTGTGAACTAACACGAACAAACAATGAGTGTATTGTTTATTGTTAGTTAATACATTAACTAATGTTAACAAATGAAACCTTATTGTAAAGTGTTACCAAAATATCTTGTTTCTCAAAGTCCAAGCTCTGTAGTTTGTTGGTATTAGAATGTATTTATATGTGATTTTATTCTCTTGCTAACTATTTCCGTGTTTTTGAACATGCGCCTCTGCTAATCTCTGTGTATGTGTGTTACATTGATTCGGTGTGGTCTCTATGACCCTAAACTACTTAAAACTCCATTACATGATTGCCTGCCATCAAAAAAGCCAGAAGCTATTGCAAATCATTCCGAATGGTCATTTAAATCCAATCAAACTCAAGACTATTGACTTCAATCCTTTCATTTTCATTTCCAGACCACAGCATGTTTGTGTTGCTGTACTGTGCCAGGTGCTCACCTACTAGAGGTTCCTTTGTGGTTCCTCATCAGGTAGAACAAAAACATCTAACCATGCTCTTGATTCCCATGAGATTGTAGTATTCTGACAGTGCTCTGCCTGGGATTGGATCCGATGACCCCTAAAGATCTGTCGGACCCCCAATGTCCGTAATTCCTTAGCGTTCGGCTCTCTACGCAAAGCAGATTCCCCTCACCCTACGAATGCACCACCGCTGTCTACTCGTAACCCCTGAAGCAATGCCTCCTGGGACCCAAGGACCAAGGCCTGTAATCCATCATATGTGTGTGTGTGCGAGCTCAAATTCAGCTCCGCCCTTAACCGAGGACAGAGGAAATTGATTCAGCTCTCTGTTGAAGCGAACAATCTGTTATTTTCTCAAAGAAAAAAGTGCTGGTGCCGAGTGCTGATGGTGCAAACTCTCTTGCTTGAACACACACCGTGTACAAACCGCAGTGCCGTTTCAGTGGAGTGTCATCATCAGAGAAAGCTTCCCGTCGCTCTGATGGATGGTGTGTTTTTGAACCTTGAACTCTGTTCACCTACAACACAACTCAATCAAGCTGGCCGCTTGAAGGAATCTACTAGAACTATGACATCAGCTGTGTCAAAACTGGGGTTTAGATTGCGCCAACTTTGCGTCCTCTCTCTTTATCTCTCTCAAACTCCACTTCCTGTGCAGGACTAATAGTGTGTGCGATGCTGTTGTGACCGTGTGGTGTTATCTGTGCAGTTATTGAGTTTGACTCCTGTTACTCTGGGAGTGAGGTGGGAGCGAGAGTTCCTACCAACCCCGGACAGCTGTGAATGGGGAGGAGGAAAGGGTAACTTAAGCTTCCTGCACTACAGCGTATGTTGGGGGGGATGAAATCTGAGCCCCCTCCTGTCCCTTGTCTCCTTCCTGCTGGTGTTTGAAATTGATAGGCGGTGTGGGGTCCTTCACAAGGCTTGGGAGTTTATGAGTGTGATCTAAAGAACAGCTGGAGTTGGCCACTGGCCGCTCAGTCTGCGGCTTGGCCCTGGGAGGGTGTCAATGAGAAAATTTGTCAGTAGTGAAGACCTCTGCCCTTGAGTTTATTTCTTTATCAGATGTGTTTTGTGCTAATTGCATGTTTACTTGCATTTAAGGTACATTATATAGTGCAACAGTCGGGTTCCGGAAGTAAAAATCCCATTTAATTTCTCCATAGGGGAATTGATTAAAGGTCACCTATTATGCTAAATACACTTTTACAAGGTGTTTGGATATAAATGTTAGCAGTGTGTGAACACAACCACCCCACAATGATAATGTTAATGCTTCAGATAAGTGCTCTCAGAAAACGATCTATTAGAAGTTTGAACTGATATAGCTTTAAGACGTGCGGAAATAATAAACTTTAATAATGAAAGAAAAACTATGCTATCCGTGAGAATGTTCGCGATATAGATGATAAACAAAACCAAGCAGATCTCTTGTTAATATTTGGCAGAGAATCCAACTGTGATCGTAGAGAGGGGGCGGGGCACAGCAGCTCATTTGCATTTAAAGGCACATGCATGAAAACAGCCTGTTCTTGACTGTAGTCAGAAATGGGTATTTACAACATGGATTTATAAATGATCTGTGAGGTATTTTAAGCTGAAACTTCACAGACACAGTCTGGGGACACCTGAGACTTAAATTACATCTTAAAAATGGGCATAATAGGGGACCTTTAAGGGGAACTTATAAATCATGCTAACCTTGGCAATGTATTAACAATGGTATATGCTTTTGTTGAAGCCATCGGTGTGCAATAATTCATTTTTAATATATATATATATATATATATTTTTTAATAATCATGTTTAATTGCAGAATCATGGGTAATGTTGTTTTTCACCAAGAATTCTGCTAAGAAATGTGGCACTTTTATCGAGTCACCCTACTATATATATATAAAGCAATGCTTTGTTGTTTCAACTCATTGCTGGTTGATTTGGTTCATTGCTTATAACACTTTAACAAAGACTTTTTTAAAAATCCCTATTGAGAAAATAATTGGGGGAAAATATTCCCAGTACCAAGGCTGCTGAAACAGGCACTTTTGCACTCTAATCTATAACTAATAGCTTATATATATATATATATATATATATATGCATAGACTTCCAAAAGGCACTTTCAGCCCTTCTGGTCCTCATTGTGAGCTTGTGAACACCCTTCTGAAACCTAAAATGATGAATGGGACATCCCATGATCTCATGGACTTCACGGATGAAGGCCATGGGACTGTATGTTCATATTTAGTGCACATTTGGGACAAGGCCCATGTTTTTCAAGGCTTCTTGTACTATCATGATTTTGTTATTTATTGCCATTTTTTACCTTTTCTCTGACCCTTAGAATTGAGCATTTTTTGCTACTGTTCCTTTAAGACATTTTTAAAATGTAACTAGTGTCTGTTGTTATTGGCAAACCTTACTAAACCAAATGTCACATTATAATTCATCAGGGCTGGCCAAGTTGCTGAATACTGATGTATATTAATTGAGATGTATATGTGGGTGGTCTTATGTTAATGAGTTGGGTGTGATGTCATAATCATGAGGACTTTTAATGGCCTGTTTTGAACATTTTAGTATGTGCATTTAGTACATTGAATGTTTTTATTTCAAAATAGCAAGGATTTATTTGCCTTTTAAACTTCAAGGATGGCCTGAATGTACTTTTTAACCACTTGTTATGCGAATTGTCTTGTCATGCATGTGTGAATATTGAGTTTATTTTGACAGTGATCTCTCGTTCATCTGTTTGGTCTGGTAAAATCGCTCTTACTAGCGAGGCAGCGAGACAAACAGATGGACTGATAGACATGCATACACACACACACGGCACTTATAAACTTGAAAACGAGAGGCAGAGGGACACATGGAATGGCTGGGAGGGTGCGCACACCAACACACATAGTATTGTGGCTAAAGGCCAAGTGCATAGAAATCAGAACAGCTCCATTCAAATGCAAAGTAGAGTCTTATCTACAGACTGTTCTTCGCTGCTCTCCTGTGCTCTACACCGTTCAGGGCAAAACTATTATTTGGAGGCATGCGTATGTCCGTGTGTGTGCACTGGTGCCTGTGTAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGATCTGAAGTATGCATGAATGTGAATTTCAATGTGAAGGTCCATCAGGGTTTCTCTGGCGTCTTTCGTCATGGTTTCTTCAGGATTTTTACAGGAGTTAAGGATATTCACAGGAGGTTTTCATTAAAGGTTTTCCTCATGTTTTTGTTCATGAGGTCCTCTTGATTTTTACTGTTTTTTTTTGTTTGTTTTTTTATCACAGATTTTAACTGGAAGTTTTCCTCATGGTTTTTCACTGAGGTCTTTCCTCATGATGTTTACTAGGTCTGTTCTCGTGGTTTTCCGATGGGGATTTTCCTCATGATTTTTACTTCTGTTCTCTTATAGTGTCCGAGCATCGAAACACACGGCTGAACCTTTATGAGAATAATCAGTCACATTTTTCATGGCTTTAACCTGATAAAAGTGTCCAATATTCATCCTTTAGCTCCTAGAGGAGGGCCCCACATTTCATCCGTTATGTCATACTGTAAAGCGGCTGGCCGTCCTAGAGATGCTTTTTAAAATGAAAACTGCTAAATTGTCCTGATCAATCACTTTAATTTGTCTGCCACATTGTTATCAAGACTTAAATGCATTTATTTAATGCTCAGTTGTGGCGTTTGTTGTTGTTGAGATCAGTAGTGTTTCATCCTGGTGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGAGAGAGAGAGGATGGTTTAATATCAGATTACTGACCTGCACAGGAAATGAAAGCAGATGACAGTGAGTGATCACCTTGTGAGTGTACTTTGTGTGTGTGTGTGATTGACAAGGCAATGCGTTTGACTCCGTCTATCTTTAAGAAACATTAATAGTCTCTTGCTCTCGGCTCCATACATCTGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTAAGGAGAGGATGAATTATGCATTTCTAGCAGACTATGAAAAATGAACACTTGCAGATTCTCATCTACATAAATTTTCATTGTATTTAGACACTAGCTGCATGTTTACATAGTGAATACAGGCCCATTTATTTAGATAGTCTTTCTAAAGGTTATACAATCTTGCTGACCTCTAAACATGCAGGTGACCTAAATGAGACTCAGGCAAAACATAACCCCAATGATGCACCATTGTGAGAGTAGTTATAAGAGTGTAGTCTAATGCATTACTTGCACACTTAAATGCAATTCATTCCTTTTATTTTGAGATCCTTGCAGATTTTTTCTACCAAGACACAAATAAATTCTCTGACACATTATGATGAATATTGATTTGGTTCTTTATAACATTACAGAAATGATACTGAAAAGCACGTAATTCCACTGGAGATCCAACATAAAGCGTCTGTATTTAGGCAGTGGCATATGCACAAAGAACACATTTGGACCCTATAATTCTGCATGTAGATGCCGGGTTAGTTGGAGATAACCACACAGATGTACACACTGTAATTCAGTCCATGCAAAGCAAATTGCAAACGTTATGCAAAATGACATTTGCTGCATGTTGCATTCTGTGATTTAAAACCCTTTCATTCTCGCAGCAGGTGGATAATGTCTCAGTTCTTAAACTCAGCTTCAGTACTGTATAACATCACACTGAACTGCACTGTAGCATTTGGACTCTCTCAACCGGGCGAGAGAAATGAGAACAGTCCGATAATGATTTCCTGTAGCCGAGCCTCTAATCCCAAACACAATGCTTATCTCTGTGGTGTAAAGCATGTGTTGTGTGGTAAGCCGGGTTTCAGATTGGCCTCTCTCTGAATGGACAGTCATTGAGGAGTCTTGGAGAGGCCGGTGTGGTGAGGTGATAGCAGGGACTTCTGAAACGCAGTAGCAGATAGGAGGTCATTCGCTGGAAATGACCTCCGATGGGCCATTGATTGACCTGGTATTGAACCTTTGCTAATAGACTGGAGGGACAGTGCAGGTCTGGATGTGGGTGATACAGTGGAATTCAGGTTTTGTAAACATCAAACGGCTTTCGTGTTAGTGGAAAAAGGAAATTGAGGAGGCGCTCATAGATTTTATCTAATACAGATAGCAGATAATTTAATATACAATTACATCTTTGTTACATACCTACATTTATATATTTGGCAGATGCTTTTAACTTACATTGCATTTAAAAGGTTAGTTCACCAAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCATTCATCTTCGGAACACAAATTAAGATATTTTTGATAAAATCTGATGGCTCAGTGAGGCCTGCATTGACAGCAAGATAATTTACACTTTCAGATTCCCAGAAAGATACTAAAAACACAATTAAAACAGTTCATGTCACTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354341 True 6047 lncRNA 0.40 2 5007002 5013224

Neighbor

gene id symbol gene type direction distance location
CI01000095_04982165_04986822 NA coding downstream 19642 4981922 ~ 4987360 (-)
CI01000095_04948770_04959779 NA coding downstream 46817 4948604 ~ 4960185 (-)
CI01000095_04923302_04930194 NA coding downstream 76633 4923293 ~ 4930369 (-)
CI01000095_04829891_04901481 ROBO2 coding downstream 105521 4829891 ~ 4901481 (-)
CI01000095_04332781_04341944 CAB39L, CAB39L.L, CAB39, CAB39.L coding downstream 662034 4332759 ~ 4344968 (-)
CI01000095_05017627_05022990 ROBO1, ROBO3, ROBO2 coding upstream 4139 5017363 ~ 5022990 (-)
CI01000095_05039659_05041786 NA coding upstream 26295 5039519 ~ 5042700 (-)
CI01000095_05211660_05234474 NA coding upstream 198363 5211587 ~ 5237234 (-)
CI01000095_05357475_05373425 SEL1L3 coding upstream 342690 5355914 ~ 5373425 (-)
CI01000095_05378348_05413679 STIM1, STIM1A coding upstream 363802 5377026 ~ 5413679 (-)
G311834 NA non-coding downstream 171744 4833888 ~ 4835258 (-)
G311782 NA non-coding downstream 316183 4689084 ~ 4690819 (-)
G311645 NA non-coding downstream 475294 4531445 ~ 4531708 (-)
G311063 NA non-coding downstream 558915 4447880 ~ 4448087 (-)
G311057 NA non-coding downstream 578932 4427869 ~ 4428070 (-)
G311844 NA non-coding upstream 108858 5122082 ~ 5127163 (-)
G311851 NA non-coding upstream 323098 5336322 ~ 5383202 (-)
G311861 NA non-coding upstream 383119 5396343 ~ 5401505 (-)
G311862 NA non-coding upstream 390737 5403961 ~ 5442273 (-)
G311880 NA non-coding upstream 463217 5476441 ~ 5476766 (-)
G311036 NA other downstream 644376 4357325 ~ 4362626 (-)
CI01000095_03528759_03538412 NA other downstream 1469769 3528463 ~ 3539055 (-)
G310207 NA other downstream 1784334 3192098 ~ 3222668 (-)
G309815 NA other downstream 2275298 2663330 ~ 2731704 (-)
G309753 NA other downstream 3825244 1178597 ~ 1181758 (-)
G311701 NA other upstream 135801 5149025 ~ 5154494 (-)
CI01000095_05604829_05607020 NA other upstream 592989 5603542 ~ 5607020 (-)
G312335 NA other upstream 1221161 6234385 ~ 6237845 (-)
G312368 NA other upstream 1266369 6279593 ~ 6280086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009457 NA non-coding NC_007126.7 CM002899.2 38901933 ~ 38910271 (-)