G311844


Basic Information

Item Value
gene id G311844
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5122082 ~ 5127163 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU354497
CTGTATTACTTGCTTAAAATGAACCCAAAATACACTGCTCAAAAAAATTAAAGAACTCTTTGAAAACACATCAGATCTCAATGGGGAAAAATATCATGCTGGATATCTATACTGATATGGACTGGGTAATGTGTTAAGAACGAAAGGATACCACATCGTTTGATAGAAATGAAATTATCAACCTACAGAGGACTGAATTCAAAAATCAAAGTGAAAAAATGATGCAGCAGGCTAGTCCATTTTGCTGAAATTTCATTGCAACAACTCAAAATGGTACTCAGCAGTTTGTATAGCTCCCCACGTGCTTGTATGCATGCCTGACAACGTTGAGGCATGCTCCTAATGAGACGACGGATGGTGTCCTGGGGTATTTCCTCCCAGATCTGGACCAGGGCATCACTGAGCACCTGGACAGTCTGAGGTGCAACCCTGTGGTGTCAGATGGACCGAAACATAATGTCCCAGAAGTGTTCTATTGGATTTAGGTCAGGTGAGCATGGGGGCCATTCAATGGTATCAATTCCTTCATCCAGGAACTGCCTGCATACTCTCACCACATGAGGCTGGGCATTGTCGTGCACCAGGACCCACTGCACCAGCATAGGGTCTGGCAATGGGTCCAAGGATTTCATCCCGATACCTAATGGCAGTCAGGGTGCCTTTGTCTAGCCCGTAGAGGTCTGTGCGTTCCTCCATGGATATGCCTCCCCAGACCATCACTGACCCACCACCAAACCGGTCATGCTGAACGACGTTACAGGTAGCATAACTTTCTCCACGGCTTCTCGAGACCCTTTCACATCAGTCACATGTACTAAGGGTGAACCTGCTCTCATCTGAAAAGCACAGGGCGCCAGTGGCGGACCTGCCAATTCTGGTGTTCAATGGCAAATGCCAATCAAGCTCCACGGTGGCGGGCAGTGAGCACAGGGCCCACTAGAGGATGTCAGGCCCTCAGGCCACCCTCATGAAGTCTGTTTCTGATTGTTTGGTCAGAGACATTCACACCAGTGGCCTGCTGGAGGTCATTTTGTAGGGCTCTGGCAGTGCTCATCCTGTTCCTCCTTGCACAAAGGAGCAGATACCGGTCCTGCTGATGGGTTAAGGACCTTCTACGGCCCTGTCCAGCTCTCCTAGAGTAACTGCCTGTCTCCTGGAATCTCCTCCATGCTCTTGAGACTGTGCTGGGAGACACAGCAAACCTTCTGGCAATGGCACGTATTGATGTGCCATCCTGGAGTTGGACTGCCTGTGCAACCTCTGTAGGGTCCAGGTATCGCCTCATGCTACCAGTAGTGACACTGACCCTAACCAAATGAAAAACTAGTGAAAAACAGTCAGAAAAGATGAGTAGGGAAAAAAATGTCGGTGGCCGCCACCTGTAAAACCATTCCTATTTTGGGGGTCATCTCATTGTTGCCCATCTAGTGCACCTGTTGTTAATTTCATTAACACCAAAGCAGCTGAAACTGATTAACAACCTCCTCTGCTACTTAACTGACCAGATCAATATCCTACAAGTTTAACTGACTTGATGCTATTCTCTGATTAAAAAGTGTTCCTTTATTTTTTTTGAGCAGTGTATGTTGGAAATTAACATTTATTAATCTTTTGATTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTTTAATTTCCAACCTATTTTGGGTTCATTTTAAGCCAGCCATATAGTAATTTTTAAACAATAGTTGGGTCAAATAAAACTGCCTAGCACATTGGGCAAACATTTAACCCAACCGCTGGGTTTGTCCATTTTCAACCCAACTTGATTGTATTATATTATTTTATTATATTATATTCAAATAAAAGGATGTACTTAATTTTCCCATCTTTTTAAATATAATTGGCGTATTTTTGACACGTTTGTGCCCTGAGCCCAGGTTTATTTCCGACGCTGCAATGAAATCACTCACAATAATGTTCTGTTATTGGCTCATTTGCTTAATGTTAACATTTGTCTCTTTGTCATCTTGTTTGACAACTGGTTGCTTGTGGGCTTTTGGACACCGCAAATCACTATATGAACTCTCCTTTAGAAGGTAACTGGCTATCTGCTAGTGGTATTGCTAGCAAGTAAGTAGAGTGTCATACTCTCAGGCCCATACTGTACCTGAATTACTACACTCGTATGTTAAAAACTGGAAACAAATTCCCTAAAAGCATCAGCTTGCGTAGGAGTATACGTTAACCTCACACTCACAACGCTTTCTGGCCCTTTAATCAAATTGTGCAAATGACACATTAGATGTTATTGGGGGGAAAAAAAATGATTGCAATCTATTTTAGAGACAGAGGAGATCACAACGAAGGCACACGCGGAGACGGGCATTTAGCGTATCGCGTGTCATTTGTTTTGGAAACATATATTACATTAGAGGAAGTGGGCTGATGATATTTCCTGCTGTGTGGGAGCTTTATTGTGCCCTGGGGCAACATGTGTTGAGTAATTGAGGCACTAATGTAAATAACGACTCGGATAGAAGATCAATCATTGGCCAGTATTGAACTTTAATATTTGAGTCAGACACGAGTCCTGTATAACACAGATATGAGACATCAACGACATTCCCTAAAGATACTCTTAGACATACAGGGTGTTTATGTAAAGCCCATATGTTGTGTATGGTTTATGCAAATGCTCTCTCCCACTCTCTTTCCATCCCGGTCTGAACTTCTGACTTGTTTTTGCTCTCTTCTGCTCATTTTCTCTCTCTTAGACATTAAAATTGCAAATGAGGAAATGTTTCCTCTATAGAGATTCAGAAGAGATCTCAACAACATCTCAGACTGTGCTGAGATTTGCTGAGATGCCAAAAAAGAGATCTCAATATGAACTCAATACGCTTTCATTATTATTATTTACTTCCTTTTTCACTCTGAAATTCATCAGATGGAAGTAAAATGGGTCACAAATGCCATTTCATGTTGACTTTAAGTCTCCAGAGCTATGAAAGAGCAACCTCTGAGCAATAAAATATTCCTCTGGCATAAACACACACACACAACGTATTGAAGACAAACAATCTCTTCCATTCCATTGTCGTATCAACATTATTTAGAGCTGAGCAACAGTGAGAAATGCCCCAGATATGATCAGCCAATGGCCGGGCGTCTGCCATCTATCAGCGGGTTCTGCAAATGCAGGGAATTATAAATAACACAGGCAGGGGATGCAGGAAGAAATAGCTCCCAGTAAACAGATAATAATTATGTAAATGTTGTTGGACCTCGGGACTTGGTGAGAAATCTGTAACCGAAGCTCCCTAACAGCCGAGTATGCAGATAGTCGTTTTAATTTACTCTCTGCTTAACTCAGATAAACTGTCTTGTGGCTGTTTACCAATGCTAAAAAGATACTCCATCACAACGGTCACCCTATACTGAGTGATTGGGTTTTTTTAGTGCCAGTGAACCTGATTAATGCATACATAATGTACTGACTTATCTTCAAAATTCATTTCTCTTTTGGAATGTTTTAGGTTTTATGAGAAGTAACTTACGTGATTTGTTCCAATAGCTCAGAATAAGCCTTTGTCTCTCAGAGCTTGGAGAACTTGCACAACTTCCTCACAGCATCTGTTTCCTGCCATATTTGCAGTTTTAAGCTGATTTGTCCTAATTGCAGAATCTAACAGTTGTCTAATGTGTTAGACGGGGAGTTAATTATCCGAGCGCTGCGTGCTGGTGCGCACTACATCGCGTGCACACTTTACAGCCGCTAACGGTCTCTAACTATATGCCAGCTTCTCCTCACGCCACAGACTGTGTTCCACCAAGAAAAATGGGCACCGCTCATCCAAAAATAACGTGATTAATGAGTCCGCCCGGCCTGATGTTCTTATGACTGTCTTTCTCAAGATCTCTCTTTTTAATATGCATGTCTGAAACTCGAGCTGCCAAGAAAAGATTGTCCCGCTAAGATGAAGGGTACGATTTTCAGTCAGCCGTTTGAGGTTTGAGATCTTCATCATTAAAAGAATATTCCGGGTTCAGTGAAAGTTAAGCTCGATCCATCTGATGTAATGTTTATTACTACAGAAAATTATTTAGAATAGTCTCTCGTTAAGAGAAAAAATGCCGTTACAGTAACACTATTACAATGGAGATTTTAAATGGGGCTTTTACGTAAGAACTTTCATGTAGTAATTCCTTTTTTATTTGCCAAAGTGTGAACAGCTTGTAACAAAACTTAAAAAAATAAAAATTCCACAACTTTCTTTGAAAACCTGTAGAGTGATTTTTATGTGATAATCAAAAGGATGTGACGATTACACTCACTCCCAAAAGCCTCTCTTCCATTCTTTGATATGTGAAATGAATACAATGTTCAGGATAATGCAGAGAGTCATTCTGTACTGTAATGTCAATGTGTCATGCAAAGAATAAATTCAAACTATAGTAGCGCATAGCTAGATCTACTCTATAGTCTCAAACTTTATAATAAAACTATCATCATAACAGTGTAATTTTAATGACCTCATCTGTCGACATGATGCTGGTGAATTGCAGAGCTTTTGCAAACATATCAACATAACTATGATCAGATGCTTTCTTGCGCTGTCATTTTTGTTGTGTTTATTGTGTTAATGAGAGAAAAGTGCGCAGTACATATTTACATATTCTGCTTTCAGCAGCGTGGACGGCGTTTGGATGTTCGTTAACAGTTTTTTGCTGCAAAGGTATTTTCATCTTATTTTAACTTCTAAACAAAGAACAAAAAGGTACTTTGCCGTGAGTATATCGAGGCAATGAATCACGTTCAGTCTCTTGTACATTACGTGTGCAATAATTTGCTGGCTGCAGTTCACTTAACGGCCACTGGTGTCACTAATAAGAAGGGTTTCTGAATTCAAAATATAGCCCCTAACTGTTTCCCAGCCAGCATTTTTTTTTAAGGTTGCTAGTCAACGCCAGCATTTTTCATAAAAATGTTATGCCCCCAGAATACTTTGTATCTGTATCTGAACATGCAATATATCAAAGCCTCTTCTTTAAAAAAATAAATATATATATATATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354497 True 5046 lncRNA 0.41 2 5122082 5127163

Neighbor

gene id symbol gene type direction distance location
CI01000095_05039659_05041786 NA coding downstream 79382 5039519 ~ 5042700 (-)
CI01000095_05017627_05022990 ROBO1, ROBO3, ROBO2 coding downstream 99092 5017363 ~ 5022990 (-)
CI01000095_04982165_04986822 NA coding downstream 134722 4981922 ~ 4987360 (-)
CI01000095_04948770_04959779 NA coding downstream 161897 4948604 ~ 4960185 (-)
CI01000095_04923302_04930194 NA coding downstream 191713 4923293 ~ 4930369 (-)
CI01000095_05211660_05234474 NA coding upstream 84424 5211587 ~ 5237234 (-)
CI01000095_05357475_05373425 SEL1L3 coding upstream 228751 5355914 ~ 5373425 (-)
CI01000095_05378348_05413679 STIM1, STIM1A coding upstream 249863 5377026 ~ 5413679 (-)
CI01000095_05538915_05541548 NA coding upstream 411444 5538607 ~ 5543317 (-)
CI01000095_05555392_05575055 NA coding upstream 427925 5555088 ~ 5575067 (-)
G311697 NA non-coding downstream 108858 5007002 ~ 5013224 (-)
G311834 NA non-coding downstream 286824 4833888 ~ 4835258 (-)
G311782 NA non-coding downstream 431263 4689084 ~ 4690819 (-)
G311645 NA non-coding downstream 590374 4531445 ~ 4531708 (-)
G311063 NA non-coding downstream 673995 4447880 ~ 4448087 (-)
G311851 NA non-coding upstream 209159 5336322 ~ 5383202 (-)
G311861 NA non-coding upstream 269180 5396343 ~ 5401505 (-)
G311862 NA non-coding upstream 276798 5403961 ~ 5442273 (-)
G311880 NA non-coding upstream 349278 5476441 ~ 5476766 (-)
G311882 NA non-coding upstream 359168 5486331 ~ 5487579 (-)
G311036 NA other downstream 759456 4357325 ~ 4362626 (-)
CI01000095_03528759_03538412 NA other downstream 1584849 3528463 ~ 3539055 (-)
G310207 NA other downstream 1899414 3192098 ~ 3222668 (-)
G309815 NA other downstream 2390378 2663330 ~ 2731704 (-)
G309753 NA other downstream 3940324 1178597 ~ 1181758 (-)
G311701 NA other upstream 21862 5149025 ~ 5154494 (-)
CI01000095_05604829_05607020 NA other upstream 479050 5603542 ~ 5607020 (-)
G312335 NA other upstream 1107222 6234385 ~ 6237845 (-)
G312368 NA other upstream 1152430 6279593 ~ 6280086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G98375 NA non-coding CI01000016 null 9085228 ~ 9098103 (+)
rainbow trout (Oncorhynchus mykiss) G965709 NA non-coding NC_048575.1 CM023229.2 30665776 ~ 30666713 (+)
bowfin (Amia calva) G89728 NA unknown CM030130.1 CM030130.1 39400524 ~ 39408261 (+)