XLOC_011021 (si:dkey-33i11.1)


Basic Information

Item Value
gene id XLOC_011021
gene name si:dkey-33i11.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45303096 ~ 45327616 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021523
GAGTCGGGGCTAGTAAATGGCTGGTGTATTTCTCCAGGACGGACATCTGTGTTTGGGCTGGGACAACAGTAACGCTGCCGTGCCGCTATGATTATCCGTCACCCTTCAGTTCCACGCGGGTCATGTGGTTTCACATATCTGATGATGGTCGACGGGAAATCGCTTTCCACACTGACGCGGGTCTGTTGAGCCCTTCATACCGGGACAGGATCAAATACATTGGAGGCTACAAaagatgcagcctgcagatcACTAATGTGAAGCTGAGCGATGCGGGAATGTACCATTTCAGATTCGAAACCGACAACCAGCAGGGAAGATGGACGTCTCCTGATGCTATTACGTTGTCCGTCACAGAGCTTCAGGTTAACGTACATCCGCCCAGAATTGGTAACATGTTTGCTGCCGGTGAGACGGTTTTCCTGAGTTGTGTGGCACGAGGTTGTGCTGCTCCTGGAAAGAGTTTTGCCCTTTATCGAAATGGAGTAAACTTGGGTCAGTCCAGCAAACTGTCCGCCATCTATAACTTCAACAGTCAGCATGCTGGAACCTACACCTGTCGCCCTTTACCCATTCAAAACGTCCAGTCCCCGGGGCTCACTCTGGCTCTGGGATatCCTCCTCGCTACACCGCGATTCAGATCAGCCCTCGAGAGGCCGTCCGAGAGGGCGATTCGGTGACTCTGACCTGCAGCAGTGATGGAGCTCCGCCAGCAGAAAGCTTTGCCTGGTTTAAAGAAGGAGAGAGTGGCAGTCTGCCAGACAGCTTTAAACCTGAGCTGAGGCTGTGGAGTTTGGACTACAGGGACTATGGGGAGTATTTCTGTGTGGCCCGAAACCCGCTCGGCACAGACCGGTCCAGACCTGTTCTGCTGAACCTCACCTACCCGCCCAAAAACACAAGGATCCTCATCAGTCCTAAAGGAGACATCATGGAAGGCTTTTCAGTCAATCTGACCTGCAGCAGCAACGCTAACCCTCCTGTGCTGAAATACGCCTGGTATAAAGTGAACGGTGGGCAACCCTGGACTAAAGGCACGGCGCAAAATCTCACTTTCTTCAGTGTGCGTTCCCATCATGCCGGACAGTACTACTGCACTGCTTGGAACGCATTTGGCATGGGGACGTCGCCTACTATTTCCCTTCCAGTGCTTTATGCCCCTAAAAACACCTCTGTTTTGGCTCAGCCCTCCACTGTGATCGAAGCGGGCAGCTCGCTGACACTGACCTGCATCAGTCAGGCCAATCCGGCGGTGGAGAACTACACCTGGCACCGGATCAATACGGCTGACGCCTGGGAAACTCGATCGGGCCCCAGCTACACCATTGCTGAGGTCAGTTCTGGAGCCAGCGGACAGTACTACTGCGAGGCCCGCAACCGCATCGGTGCACACAGCTCCCCCATACTCACCGTCAAGTGTTCACCAGTGGTTGATTTACCAGTGGATCACACTTCATTTAGTGAATCGACTTCACAGACGTTTCTCCTCAAGGGCACAAAAATGTCTGACATCCCGGAGGAGCCAGAGGAGGTGTATGAAAgtagccatccatccatcgtgCCCTTGAAAGATGCAGCTCCGAGCTCTGAGGAACAGGGAAAAATCAACTACATTACGGTGCATTATTCTCGCATGCCCAGTCGGGACCAAGTGGAGGTCACAAACATACCGCTAGATGGAGGGAAGAAGCTCAAAGATGGCGCTAAtgtagtttattctgttcttgcCATGCAGTCAAGAGAGGGAATGGAGGAGTCTGGAATCTGAAGGTCGATTAGTGAAACCAATCAAAATTGTGAAAATACTGTACACAGGGATTTTTGTTTACTACTAGAGCATGGATGTAAGAGACTTGAGAACCACACAAATAAAAGAAATTTGGTGGCCTG
>TCONS_00021524
TAAACCTGAGCTGAGGCTGTGGAGTTTGGACTACAGGGACTATGGGGAGTATTTCTGTGTGGCCCGAAACCCGCTCGGCACAGACCGGTCCAGACCTGTTCTGCTGAACCTCACCTACCCGCCCAAAAACACAAGGATCCTCATCAGTCCTAAAGGAGACATCATGGAAGGCTTTTCAGTCAATCTGACCTGCAGCAGCAACGCTAACCCTCCTGTGCTGAAATACGCCTGGTATAAAGTGAACGGTGGGCAACCCTGGACTAAAGGCACGGCGCAAAATCTCACTTTCTTCAGTGTGCGTTCCCATCATGCCGGACAGTACTACTGCACTGCTTGGAACGCATTTGGCATGGGGACGTCGCCTACTATTTCCCTTCCAGTGCTTTGTAAGTTTACACCTATTAGGGATCACAAATTAGctcaaactacactgtaaaaaatgcagggttccacaccgttccttcatgttgtctcatcacaaatagattaagttaacttaaaaaatttttacaaaatattttacaaataagtggattgaacataaaacaattaagttgtccataAAGCAGCAAGTTTGAgtgtacacagcaaaatatggggacccaaaacaactctatgggtgttaatttcaacactttgaaagtgtctcatggggtccactcaaaacagacttaaatcaacactttcaaaagggttggcacattgacaccaaagtaagggttaattttaactctgggcagagttaaaaaatgtaactatatttaacaccacctggtgtaatatattgttattttattcaactttcttgagtgtaaatatggtaaaaaggtcaaatagactgtaaattacaaaataaaaaacattttatttgaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4630 No description available

Ensembl:

ensembl_id ENSDARG00000053027

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021523 False 1891 mRNA 0.52 8 45303096 45327616
TCONS_00021524 True 874 lncRNA 0.41 2 45316190 45322513

Neighbor

gene id symbol gene type direction distance location
XLOC_011020 hpn coding downstream 14497 45249055 ~ 45288599 (-)
XLOC_011019 FP016247.2 coding downstream 57354 45242381 ~ 45245742 (-)
XLOC_011018 si:dkey-33i11.4 coding downstream 67149 45228101 ~ 45235947 (-)
XLOC_011017 fxyd1 coding downstream 77576 45202602 ~ 45225520 (-)
XLOC_011016 FP085399.4 coding downstream 109944 45186673 ~ 45193152 (-)
XLOC_011022 rgl2 coding upstream 36537 45364153 ~ 45398408 (-)
XLOC_011023 NA coding upstream 464769 45792385 ~ 45795127 (-)
XLOC_011024 ntrk1 coding upstream 468986 45796602 ~ 45854882 (-)
XLOC_011025 afp4 coding upstream 576537 45904153 ~ 45910050 (-)
XLOC_011026 afp4 coding upstream 585031 45912647 ~ 45917683 (-)
XLOC_010626 CR392024.2 misc downstream 24407921 20895112 ~ 20895175 (-)
XLOC_011015 FP085399.6 non-coding downstream 128536 45174446 ~ 45174560 (-)
XLOC_011012 FP085399.5 non-coding downstream 158724 45140858 ~ 45144372 (-)
XLOC_011011 FP085399.3 non-coding downstream 168617 45130921 ~ 45134479 (-)
XLOC_011027 NA non-coding upstream 654857 45982473 ~ 45994189 (-)
XLOC_011028 NA non-coding upstream 759873 46087489 ~ 46097432 (-)
XLOC_011029 NA non-coding upstream 868509 46196125 ~ 46203345 (-)
XLOC_011030 BX537142.1 non-coding upstream 889192 46216808 ~ 46216909 (-)

Expression


Co-expression Network