G312383


Basic Information

Item Value
gene id G312383
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 6292358 ~ 6294207 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU355141
AAATCATGGGATAATTTTCATTTTTGGGTGAACTATCCCTTTAAGAAATGTTGTCTAAAGTTAATATAAGTTGTATGCCGCCACAAGATTATATACGTGCAGATGTGTTCTGCTGGTGCACAGGCATAGGGAGCGTATGATGTTTGTTTAAACCTATGGAGAATATAAAAACATGTTCTTGCAGCATGTGGGCATATTCCAATTCACAGACTTAATTGAGGAATGTTGTGGAAAGGTTACAGGAAGATTTCAACAGTGCTTATGTTGAGTTTGCATAGCAATAGGGGAGTTTTACAGAATGTTGCTGCAGTGTTTTAGGGGAACGTTTGGATAATCTTTACTGCAAACCTAAGGGAGCCCTAGTTTTACACTTTCTCCATAGAGTTTAAAATTAATTGGTTGCATAGCACAAGGGGAGGCTCTAGTGTACTTACAGTGCCAAAAGTGCTAACGCTATTGGACATCTGGGAAAATGTATGTCAAGGTGCTGAACGGTCACAAATGTGTGAGCATTTCGGGAACGTTTCTTTAATGCTGTTATATCATTAGGGAAGCACTTGTGAAAATGTTGCGAGTCCTCTGGGTGCTGCCTTCTTGTGAGAGATCTGTTTAGTGAGTATTTATGGATGGCTGGAGAAAACAGCCTCCAACTATCAGTGAGAAAAATAAGTTGTTTTCAAGGAGCGCATGTTTGGAGAAGACAAAAATGTTCTGCAGTTTTTGTCTTTCTCAAGCTTGCACTTTTTGTCTGGTAATGACTTATTGCACAGTTCTCAATAATTAGCATGCATTAATTGAATGTGATTGTAATGCATGTGAGATGCAATAAATTTTTTTAATAATGAGGATTATTATAATTTTATGGTTTTCCAACAAATGAGGTATTTTTTTTTCTTTTTTGCAGATGGTGGTATCTAAAGTGAGGCATAAAACGTTATTGTTAAAACACTTGTGGGTGCAATTTAAAACCGTTTTGCAGCATTCTCTCTTTGATATCTGTGTATATGTATTGTGAGTGAATTATATTGTGTTCGCTTTGGGCTGATCGTCGTTGTTGTTGTTGCCAGGTGACTGTTTGTTGCTGCGCTCAGTCCCACCCCTAGATGTCTCCTGCAGGAAGAGGCGTGGCTTACAAAGTGACAGAAGTATTCTGCGGTATTCTCTGCGGAAGTTCTGATTGAGCAGTCCGTACACTACGGCGTTCAGGCAGGAGTTAAAATACGCCATGAAATAACTAACCACAAACAGCCAATCAGGGACCATGGGCGCAACACGGGGAGGGTCCACCGCTACAGCCAGGCCAATCAAATTCAGAGGCGCCCAGCAGACGGCAAACAGCACAAAGACGACGAACATGGTCAAGAAGTGGCGCAACTCACTTGGACGAAGGCGTGGCCTGACATCAGTTTTGACTCGCCTCCTCACACGGAGCACCAGCACCCAAATCCTCAGATAACAGAACGTAACTACTGCGATAGGAAGCAGGAAATGCACGGTCACCACAGCGATGGTGTATCCTGCACTTGTCGTCTGACTAAAGGTGCATGAATAGACACGGGGGTCATACGTCAATGACCCCAGCGCCAGGTTTGGAAGAATGGCAAGGACGGTGAGTACCCAGACTAACATCAATAGGGCCAAGGTTCCGGCGCGGCCGTAGATCTTCTCGTAGGTGTTGGTCTGACAGATGAAACAGTAGCGGTTGATGGCGATGGCGGTGATGTTGAAGATGGAGCCGATGACGCTCGCTCCCATCAGGAAGCCGCTGACCTTACACTCCATTTCCCCCGGCAGCCAGCCTGCGTGCAGCATGGCGTGCAAGACCAGAGGGTAGGGATAGCAAACCACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU355141 True 1850 lncRNA 0.44 1 6292358 6294207

Neighbor

gene id symbol gene type direction distance location
CI01000095_05885040_05886552 NA coding downstream 405803 5884714 ~ 5886555 (-)
CI01000095_05878357_05879271 NA coding downstream 412593 5878145 ~ 5879765 (-)
CI01000095_05731171_05739796 KCNJ13 coding downstream 550288 5730387 ~ 5742070 (-)
CI01000095_05637467_05689858 NA coding downstream 602500 5637408 ~ 5689858 (-)
CI01000095_05604829_05607020 NA coding downstream 685338 5603542 ~ 5607020 (-)
CI01000095_06364435_06391469 NA coding upstream 69811 6364018 ~ 6391469 (-)
CI01000095_06406333_06406512 NA coding upstream 111411 6405617 ~ 6407728 (-)
CI01000095_06414966_06435096 NA coding upstream 120759 6414966 ~ 6435359 (-)
CI01000095_06438476_06449339 USP16 coding upstream 143375 6437432 ~ 6449342 (-)
G312381 NA non-coding downstream 1032 6291111 ~ 6291326 (-)
G312379 NA non-coding downstream 2361 6289774 ~ 6289997 (-)
G312378 NA non-coding downstream 3057 6289102 ~ 6289301 (-)
G312377 NA non-coding downstream 3381 6288701 ~ 6288977 (-)
G312376 NA non-coding downstream 5037 6287065 ~ 6287321 (-)
G312392 NA non-coding upstream 363 6294570 ~ 6298559 (-)
G312396 NA non-coding upstream 6326 6300533 ~ 6300740 (-)
G312400 NA non-coding upstream 8546 6302753 ~ 6302957 (-)
G312433 NA non-coding upstream 55117 6349324 ~ 6349715 (-)
G312368 NA other downstream 12272 6279593 ~ 6280086 (-)
G312335 NA other downstream 54513 6234385 ~ 6237845 (-)
CI01000095_05211660_05234474 NA other downstream 1055124 5211587 ~ 5237234 (-)
G311701 NA other downstream 1137864 5149025 ~ 5154494 (-)

Expression


Co-expression Network