XLOC_011025 (afp4)


Basic Information

Item Value
gene id XLOC_011025
gene name afp4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45904153 ~ 45910050 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021528
ATTATAAAAGCAGAGGGTCTTTGGAGGACACACCATCACATCACATCACGCCTATATCGTCACATTGACACAAGGCAACCCTGGCTCATCCCACAATCATGAAACTCTCCCTCATCACCATCCTTGTTGTTGCTCTGGCCATCCGCTCTGAGTCAGCATCTCTGGTCAAGAGAGACGCTTCTGCTGAGCTGGACAAGATCGCCAAGTACTTCCAGGATTTTGTGGACAATCTGAAGAACGTTGAGGGTCCAGAGCTGGCCAACAAAGCCAATGCTTACCTGGAGGAGAGCAGAGCCCAGTTTCAGCCCATGGTTGAGAAGCTCCAGGAGCAGCTGAAGCCCTTTTCCAACATTGAGGACCAGATTAAACCTATTGCCGCCTCCGTCCAGGCTCAGGTCGCCCCGCTGGCTGACATTGTCCAGACCCACATCGAGGACGTCCTCAAATTTGTGGCTGACAAAACTAAAACCATCCTGCCTCCCCAGTAAACCCAAAGCAATCACCATTCCTTAGTTCACATGCATTGCTTTTGTGTCATTATGTATATTTAAgagaagtaaataataatttaaaggtcACAGCACAATCTTGCCTTCCTTTTTTACaaaatatgattgtttttttttatctcactAGTATTAAATAAAGAAgccattttgtttttcttgtgcTACTGCTGAAATAAGGGAAACATCtaagaaaaaaaatcctgataTTTTGGAGTTGATTgtgaaaaatacaaatacaaatatttaaaattattaatacataACCTAAAACACTGCATAACagataaaatatgaatattgtttttaattcTCTAGATATGAGTAtccaataaaatgtttataacaggaa

Function

symbol description
afp4 Acts upstream of or within dorsal convergence and epiboly. Is expressed in gut; intestinal bulb; intestine; liver; and yolk syncytial layer.

GO:

id name namespace
GO:0060030 dorsal convergence biological_process
GO:0090504 epiboly biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5217 Acts upstream of or within dorsal convergence and epiboly. Is expressed in gut; intestinal bulb; intestine; liver; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000041490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021528 True 858 mRNA 0.41 4 45904153 45910050

Neighbor

gene id symbol gene type direction distance location
XLOC_011024 ntrk1 coding downstream 49271 45796602 ~ 45854882 (-)
XLOC_011023 NA coding downstream 109026 45792385 ~ 45795127 (-)
XLOC_011022 rgl2 coding downstream 505745 45364153 ~ 45398408 (-)
XLOC_011021 si:dkey-33i11.1 coding downstream 576537 45303096 ~ 45327616 (-)
XLOC_011020 hpn coding downstream 615554 45249055 ~ 45288599 (-)
XLOC_011026 afp4 coding upstream 2597 45912647 ~ 45917683 (-)
XLOC_011027 NA coding upstream 72423 45982473 ~ 45994189 (-)
XLOC_011028 NA coding upstream 177439 46087489 ~ 46097432 (-)
XLOC_011029 NA coding upstream 286075 46196125 ~ 46203345 (-)
XLOC_011030 BX537142.1 coding upstream 306758 46216808 ~ 46216909 (-)
XLOC_010626 CR392024.2 misc downstream 25008978 20895112 ~ 20895175 (-)
XLOC_011019 FP016247.2 non-coding downstream 658411 45242381 ~ 45245742 (-)
XLOC_011016 FP085399.4 non-coding downstream 711001 45186673 ~ 45193152 (-)
XLOC_011015 FP085399.6 non-coding downstream 729593 45174446 ~ 45174560 (-)
XLOC_011012 FP085399.5 non-coding downstream 759781 45140858 ~ 45144372 (-)
XLOC_011031 CU469499.1 non-coding upstream 430493 46340543 ~ 46340657 (-)

Expression


Co-expression Network