XLOC_011040 (tmem176l.3a)


Basic Information

Item Value
gene id XLOC_011040
gene name tmem176l.3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46596206 ~ 46619967 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021552
gtcacggatactacgtccatagaTTTTACAGTCTGCGCAgtgatttaaaatacaaaacaaggtCTTAAAAGTAGCATTGTGTGTTAATTGTGTGTTAATATTTGCAAAGTATATCAAAAACACCAGCAGTGATGTTTATATTTGAAGCTGCTGTGGACCAAGGAAAACTTAACGTTACGTAACTTACTGACaggaaacaaaaaacaagtatTTCCACTTTCAGCCAGAAGCAGACCAACCAGACACAATAACGCTCATTCTGGACTAAAATATACAGTTCTTTATAAGGATGTCTGTGACCGTGTCTCATGGCGAGGGCACTATGATCATCACTGTCTCCTCGAACCCAAAGAGCAAATGGCCAATGCTGTGCCAGATTCTGGGTTCTCTGTGTTATGGACCGGTGTGTTTTGTGCCAGAGGATATGAGAGAGACGCTGTCAAGCACACAGAGAGTTTTTGGGATTGTGCAGATAATATTTGCCATCCTGAATCTCATGCTGGGATGTTTTGGTCTTATTTTCTCTTTCAAGAGTTGCGATTTATTCTACAGTTCGAACACTTTTGGAGGACAGTGTAACGATGTAAGGGTGTTGTTCATCCTTCAGTTGATTGTGGCGATCAGTTTCTGTGCTATGACTGCAAAGTCTTGGTGTAAGAGGGCTACACCTGCGAAGTTGGTGGAGGACACAAAATCAGAAACACAAAGAGTTGGAATTTGCACACAATCGTATTCATATTTTAAGAGCTGTAATATGACCTTTGCAGGTACTCAGGATCTGAAGGATAAGCTGACTGGCACTCACAAAGCACTTGgaATTGTGCAGATAGTAGTCGGTGTCATGAACATTACAGTGGGTTTCTTCGGGTTTGGCTCTTCTTTTTTGATTGGTGGTGTGttCCTTGTTATTGGAATAATGTGTGTTCTCGCAGTGAAGTTTCCCAGTCAAAGGCTGctTGTAATTCTAGTTTTTCTGAACATAGTCAGTGCTGCGATGGCTATCTCGGCTGTGGTGCTGTATTCACTAGATCTGGCAATGGGAAACAATTTCAGCTGCTATGAAAATTATGGGTATTATTCACCTAATAATGGCTTTAGAGGGAACAGTTTTGACAACTGTTTGTACTACAGGAATCTTAGTAAGATAATCCTCGGAGGTCTGGATATCATGATGATCATGCTGTCGGTGCTTCAGCTCTGTGTGACCATCAGTTTCTGTGTTCTGACTGGGAAGGTTTTGTGTAATAAAAGCGAGGATGGAGAGATTTTGGAGGATCCAGAACTTAAAAAGGGACTACTAGAAGACGCCATTGCAACTATTGCATGATAAAGCGAACACttaaacatattttgttttttacttacacttttattttataatcagGTACACCTGATGtgctttattcaatgtttaatgccaataatgtgagtttgaatgccattttacatgacatttattgccatactactgaaagcagcagcagatagttcacctcagattatgaaaataaaataagccatttgaaattgaactttacaactgtgactcaaaaccaacacataatGCTTCAGcatgtttattaatgttaaagaggtttaatgtgtatgaattagattataattcttaccatttcgttggagtgcagtgagtgcactattctgtgcttctgaatggcagaatttacatttctgtctggtgcaaacagcccaatcgcaaatctcgtcacgtagcgtgttgttaggacacggggttacaatgtaacctgcctacctaatgtttacgttcgtaatagttatattattttctaattagtAATTCGCATTACATTCATAATTCTGACTGAACGAAtgacgctgttttccaccaatgCAAGCCGGGGTGCTGGCATTGGGAGgcttaaatgaccaaaacaaagacagccgttccggcacgtaacgcacattttcaaagcagaatatctgacttcagcattgtttttcgataaacaagaatatttacttggcatgtttcttaaagatctgcaaacatattatggtgtttttattctttagaagagtcaaaaacttacatacagcgcATTTAATTCTTTTcacatatatttttatagataGAAAGgtgttgcttttattttttagagGAATGATGAATTTGGCATCAGGTACTTCTACTTTTACAGTTTACAATTTTACAACCTAAGAACAAAGTACTTCAACTTGTTACACCcaaaccttttttaattttaacttaattCATTACAATAATGAATTAATTGATCCAACGATATCAACACCTGCTCATTGTGATTACGTACCCCCGTATACTTTTCTGGAGAGCGCGAGCTATGTAGCCAgagctttaaaatgaatgctatggggcagtatgatgctTCTGTTTCTTTccgtgctaccagctgaccactttcctccatgTGGaaggcttttccgctgttaccggtttgctcagtagctcgccaCGTATACATCGACAGACTTGAGGAGCAGACAGGAGTTGACTTTGACGATGGgtttcgagtctggcaaagaactgttccagaaagcaggtaaaacaaaagccaaaaaataaaataaacaagtaaataacaggaatGTGGTAAATCAGAAAACGCGGTAAAAAGTCAGGCGgctgcgagggcttttctttttctggattgggGAAGGCTGTGGGCACTTCTATCGGTTGGGTCTAGGAAAGGGGGTTGATCAGTCActttaggctgatttatactactGCTTCAAGCGCAGGCATATGTTCTGGCGCAGCCTGCACGTGGACGCATAGCCAACGtgcacatctcaaaaaatgtaactacacctcACAACAAAGCATAGCGCAAGCTTTGTAgatggtcggcttggtagtgctgatgagtgtgggcgggacagagagccgcgctagcctgatggagcgattgtttacaagtgtggtgTCCTGTGAAGAAGCTTCagatggagactgttgttttgtgtttaccttatgatagAAGTTGTTGCCCATCCGCCGATTCCAGcatctgaatgagcgagtttgagccacttgcacattaaggtagcgttcagaaaaaacaaaataccaaTGAAGAACATCGACAcacaggaacataaaaacctcactgccaactagcgtttcagaaatgttttgcagagcaacacaaacagcgtgcagaagtataaatgcagggCAACTCGCGAGGCATGTGCCATGGGTTACGCCAAttactcaatgcagaagtataaaccagcctttagtcagtcaacagcggcctctggtggatttatgcgagaacagcaggagcgaatggcacttgcgagagaaatttgagatctcaaaaagcgtacagagCTGCCTCTGGCGGATTCccggaaacaaaaactgcaaaaagacataggtcctgggatgtatttcgcgtTCTCCAAAAATTTATAttcgtatcaataatgagcctaaTAAATTTTcactgtttaattatttatattagacttcttaatcatcatcatcatttttattataattataactcAATAACTGTTAAGggggacgcagtggcgcagtaggtagtaatgttgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttggcgtttctgtgtggagtttgcatgttctccctgcatttgcgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgtggtacaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtgaatgattgtgtgtggatgtttcccagagatgggtaggctggaagggcatccattgtgtaaaacttgctggataagttggcggttaattccgctgtggtgaccccggattaataaagggactaagccgagaagaaaatgaatgaatgaatgaataaataacacttCATCATTTCATTCAGGATTTTACAGTGACTTTTAAAGAAGGATCTGTGGTTGAAAGTTACTGATTTTGTGATGCTTTTCTCAAAACGCGGCACTATTTGATTCAATTTTTGAGTTGAATCAAtatcaaaatatacaaaaatcttgtaaaatgtttttttaaaatatcaaaatcCAGTCacaaaatcctggagggactaTTCATATGCCTATAGATGTGAAAAAAGTGTTGGCACgcttaccaaaaaaataaatgaataaagattgtGTCTTAATAGTGGTTGTCTGTTTTGTAAACACTGTAGTTGAAAACCACTGTTAAATGCAACGTCatacttttaaatctattttttattagtaTGTTGTGTCTTGAACATAAAATGTACAGCTGAAACCATTCTGTGTTCTATTACAAATGAAGAGTTCAActgcaaaaacctctaagcgTTCACctaaaatcagcatttttaatcagcctcctatgtttatgttcaattATTTCACTTGAAATGCAAGAACTTATTCTTATTTCTGAAAGTAAAATTACTGGGCCTACACATAGGAGTCAGAGAAAAATGCtacttttagaagaaaatatctaattgtttttagaagtttttgcatcaAAACTCTTCGAATATTATTTGTCACTTCATCATAATTAGTCCAGCATGTACTGAAATGTTTTGTATGACTGTCCTGttacataaaaacaataattgtacAGTGCAAAAATAGTAAAGTGTAATGTgcatttgttgtgttttaaaaaaaattaaatgtgctCCTGATTGAGGGCCTGAATGGCCAATGGGAAGAAGCTCCTCATTCTT
>TCONS_00021554
ATTGTGCAGATAGTAGTCGGTGTCATGAACATTACAGTGGGTTTCTTCGGGTTTGGCTCTTCTTTTTTGATTGGTGGTGTGttCCTTGTTATTGGAATAATGTGTGTTCTCGCAGTGAAGTTTCCCAGTCAAAGGCTGGTAAGTGTGCATCAAGAGATttcatcagtttttttattattattgagcatctgcaatttatttattcatatttttttgtttgttttacagctTGTAATTCTAGTTTTTCTGAACATAGTCAGTGCTGCGATGGCTATCTCGGCTGTGGTGCTGTATTCACTAGATCTGGCAATGGGAAACAATTTCAGCTGCTATGAAAATTATGGGTATTATTCACCTAATAATGGCTTTAGAGGGAACAGTTTTGACAACTGTTTGTACTACAGGAATCTTAGTAAGATAATCCTCGGAGGTCTGGATATCATGATGATCATGCTGTCGGTGCTTCAGCTCTGTGTGACCATCAGTTTCTGTGTTCTGACTGGGAAGGTTTTGTGTAATAAAAGCGAGGATGGAGAGATTTTGGAGGATCCAGAACTTAAAAAGGGACTACTAGAAGACGCCATTGCAACTATTGCATGA
>TCONS_00021553
ATTGTGCAGATAGTAGTCGGTGTCATGAACATTACAGTGGGTTTCTTCGGGTTTGGCTCTTCTTTTTTGATTGGTGGTGTGttCCTTGTTATTGGAATAATGTGTGTTCTCGCAGTGAAGTTTCCCAGTCAAAGGCTGctTGTAATTCTAGTTTTTCTGAACATAGTCAGTGCTGCGATGGCTATCTCGGCTGTGGTGCTGTATTCACTAGATCTGGCAATGGGAAACAATTTCAGCTGCTATGAAAATTATGGGTATTATTCACCTAATAATGGCTTTAGAGGGAACAGTTTTGACAACTGTTTGTACTACAGGAATCTTAGTAAGATAATCCTCGGAGGTCTGGATATCATGATGATCATGCTGTCGGTGCTTCAGCTCTGTGTGACCATCAGTTTCTGTGTTCTGACTGGGAAGGTTTTGTGTAATAAAAGCGAGGATGGAGAGATTTTGGAGGATCCAGAACTTAAAAAGGGACTACTAGAAGACGCCATTGCAACTATTGCATGA

Function

symbol description
tmem176l.3a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM176B (transmembrane protein 176B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080829-13 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM176B (transmembrane protein 176B).

Ensembl:

ensembl_id ENSDARG00000098387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021552 False 4764 mRNA 0.39 11 46596206 46619967
TCONS_00021554 False 600 mRNA 0.39 4 46599643 46605160
TCONS_00021553 True 510 mRNA 0.42 5 46599643 46605160

Neighbor

gene id symbol gene type direction distance location
XLOC_011039 BX323793.1 coding downstream 8268 46583604 ~ 46587938 (-)
XLOC_011038 si:dkey-152b24.6 coding downstream 16225 46576702 ~ 46579981 (-)
XLOC_011037 zgc:174938 coding downstream 22995 46567408 ~ 46573211 (-)
XLOC_011035 si:dkey-152b24.7 coding downstream 28862 46530244 ~ 46567344 (-)
XLOC_011036 si:dkey-152b24.8 coding downstream 37498 46553980 ~ 46558708 (-)
XLOC_011041 NA coding upstream 1236 46621203 ~ 46622443 (-)
XLOC_011042 tmem176l.2 coding upstream 19805 46639772 ~ 46645396 (-)
XLOC_011043 tmem176l.4 coding upstream 29502 46649469 ~ 46664465 (-)
XLOC_011044 FO082781.1 coding upstream 140658 46760625 ~ 46766153 (-)
XLOC_011045 NA coding upstream 176445 46796412 ~ 46798742 (-)
XLOC_010626 CR392024.2 misc downstream 25701031 20895112 ~ 20895175 (-)
XLOC_011033 NA non-coding downstream 136356 46396002 ~ 46459850 (-)
XLOC_011032 NA non-coding downstream 202921 46350228 ~ 46393285 (-)
XLOC_011031 CU469499.1 non-coding downstream 255549 46340543 ~ 46340657 (-)
XLOC_011030 BX537142.1 non-coding downstream 379297 46216808 ~ 46216909 (-)
XLOC_011029 NA non-coding downstream 392861 46196125 ~ 46203345 (-)
XLOC_011046 NA non-coding upstream 186270 46806237 ~ 46810212 (-)
XLOC_011049 NA non-coding upstream 682479 47302446 ~ 47304669 (-)
XLOC_011054 CR388140.2 non-coding upstream 1323176 47943143 ~ 47943257 (-)

Expression


Co-expression Network