XLOC_011049


Basic Information

Item Value
gene id XLOC_011049
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47302446 ~ 47304669 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021838
cctgtactaaaatgacggctctattgacgcattccttccaatagacaacatcagggtaggcgacatctaatgtatatagcTATGGGCGCTAACTAGTATTCACATCGTATCATGCTCAACTCTTACTACTCTTTTACGCACTTTGAAAGTCTTTGCGTGATTTCAGAGAGATATTTAAGCACATATGAAGTAACAGTGGCGTCTCTACCATTGAGTTACACAATGCAGCATTTAGCTCGCTCGTAAACATCGCTGCTGTCCTCAGATCATTGTCTGAGCAGAAGTTTCATCATCGTAAGAGCATACTGCTTTATtctactgctaaatattttattttttaaatatttaaattctagattcacaggtaatatgtttgacacattatttaaaatatgtggctaagaattagctatttgtatttatttttttttagtggggccagtgaaaattttggcaaaGCAactctgaaccactggtccaatgggctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTAAAGCGGAGGTGAACAGTATTATGACAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCTCCATCCTGGAGTGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactctgaaatgtgtaatgtgtgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagatgggcgtttatttatttatttaatacgtaTAACCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCATTTTTTCTgttcatctgaataaaatatttttttcaaaat
>TCONS_00022267
ctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTAAAGCGGAGGTGAACAGTATTATGACAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021838 False 1121 lncRNA 0.38 2 47302446 47304669
TCONS_00022267 True 240 lncRNA 0.45 1 47303945 47304184

Neighbor

gene id symbol gene type direction distance location
XLOC_011048 mios coding downstream 1070 47272825 ~ 47301376 (-)
XLOC_011047 LO017877.2 coding downstream 56883 47198112 ~ 47245563 (-)
XLOC_011046 NA coding downstream 492234 46806237 ~ 46810212 (-)
XLOC_011045 NA coding downstream 503704 46796412 ~ 46798742 (-)
XLOC_011044 FO082781.1 coding downstream 536293 46760625 ~ 46766153 (-)
XLOC_011050 LO017849.1 coding upstream 44097 47348766 ~ 47381652 (-)
XLOC_011051 sept7b coding upstream 84870 47389539 ~ 47427016 (-)
XLOC_011052 cthrc1b coding upstream 149917 47454586 ~ 47483142 (-)
XLOC_011053 csmd3a coding upstream 226847 47531516 ~ 48074540 (-)
XLOC_011054 CR388140.2 coding upstream 638474 47943143 ~ 47943257 (-)
XLOC_010626 CR392024.2 misc downstream 26407271 20895112 ~ 20895175 (-)
XLOC_011041 NA non-coding downstream 680003 46621203 ~ 46622443 (-)
XLOC_011033 NA non-coding downstream 842596 46396002 ~ 46459850 (-)
XLOC_011032 NA non-coding downstream 909161 46350228 ~ 46393285 (-)
XLOC_011055 NA non-coding upstream 738715 48043384 ~ 48056492 (-)
XLOC_011056 NA non-coding upstream 914697 48219366 ~ 48220310 (-)
XLOC_011061 NA non-coding upstream 1515681 48820350 ~ 48821345 (-)
XLOC_011062 NA non-coding upstream 1851191 49155860 ~ 49184484 (-)

Expression


Co-expression Network