XLOC_011056


Basic Information

Item Value
gene id XLOC_011056
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48219366 ~ 48220310 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021840
GAACACAGTGTctgcatgttttgtttgttgttcacAGATGTTCAGCTCCATAACCAGACTAGCAGAAAATCAGACATCTGGCGTGCTTTGAGTGAACGCATGGCCGAGAACACAATAGAGCCAGAAATGTGGAGTTACGCTGCTGTCACGGCTGATAACGTGACTCTGGCTGCTATGACGCAGCTCTACAGCCGAGGGAAGAGAAGCAATAATCAAACCCAAGCTTGAATAATTGATAAGtgtACTCAATGTCTACGTTTTCAACAGCTGCAACAGTGTCATCCAGaaattcataacatttttttagacctggggcctgtttcagtaaggaggttcaaacaactcagagtttaaacttgaactctgagttgatttaccgagagattaaaaactcagagttttcggtttcagaacagctgatctgagttgggtcaatcaacttcgagtagaccaactcagagttaagcgcgcgcaccgtgactataaaaaggcattatcagtggagcgcagacattacgagtgactatggcaatatcttataaaagagatcaccatttctttctccagctgaacttgatgttctcatgcaaagttatagcaaatatgagtgtatatatttgaaaagaagcagcc

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0007399 nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021840 True 633 lncRNA 0.42 3 48219366 48220310

Neighbor

gene id symbol gene type direction distance location
XLOC_011053 csmd3a coding downstream 144826 47531516 ~ 48074540 (-)
XLOC_011055 NA coding downstream 162874 48043384 ~ 48056492 (-)
XLOC_011054 CR388140.2 coding downstream 276109 47943143 ~ 47943257 (-)
XLOC_011052 cthrc1b coding downstream 736224 47454586 ~ 47483142 (-)
XLOC_011051 sept7b coding downstream 792350 47389539 ~ 47427016 (-)
XLOC_011057 eif3ha coding upstream 62011 48282321 ~ 48400639 (-)
XLOC_011058 rad21a coding upstream 188756 48409066 ~ 48430272 (-)
XLOC_011059 notchl coding upstream 424907 48645217 ~ 48673938 (-)
XLOC_011060 FQ976914.1 coding upstream 570916 48791226 ~ 48914757 (-)
XLOC_011061 NA coding upstream 600040 48820350 ~ 48821345 (-)
XLOC_010626 CR392024.2 misc downstream 27324191 20895112 ~ 20895175 (-)
XLOC_011049 NA non-coding downstream 914697 47302446 ~ 47304669 (-)
XLOC_011046 NA non-coding downstream 1409154 46806237 ~ 46810212 (-)
XLOC_011045 NA non-coding downstream 1420624 46796412 ~ 46798742 (-)
XLOC_011062 NA non-coding upstream 935550 49155860 ~ 49184484 (-)
XLOC_011063 NA non-coding upstream 995168 49215478 ~ 49222093 (-)
XLOC_011064 NA non-coding upstream 1016098 49236408 ~ 49237101 (-)
XLOC_011068 CR855313.1 non-coding upstream 1775168 49995478 ~ 49995594 (-)

Expression


Co-expression Network