XLOC_011062


Basic Information

Item Value
gene id XLOC_011062
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 49155860 ~ 49184484 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022269
CGAAAACTCACGAACCTGTCCGAATACACACGAAGAGGCCAGAAAACCCACTGTGGAAAAAACGGTTTGCTGAATAATAGAAGATTTAACTACTTTGATTAATTCGGCGTGATTAATAAACATACGCCTGAGGAGGATTTACTTCAGACACACAACTGTAGTTTTGAGGAAGGCCTGGAGTGGAGTCCGGACATGAGGGATCGGGACTCGTTTTTCTAGACAGGAATGATGGGGTTTCTTTAGTTCTCCTCATCTGTGATGTCCTCCTCTCCGACTGCTTTTTCTGGGATGGCCTCCAGACTGCGGCGCCCCCTGGATTCGGAGCCTGACGAGGGTCCTGCTCCTCCCTTGGCCAGATTACAGTGCGTTCTTCAGTGAAGTCTAACAACGGCAAAACCCAGGCTCGTCTGAGCAAAGCGAAGAAGGGAGATTTACACTAAGATGGATGAGGATCCTGTGCCAGTGGATGCCCGGCATCTGGAACATGATTATTGTTCAGTTCCTGAACCCACGGTGGTTGATAATGCACTGAATCAGGCTGACAATCTCTGTAAACTGGTGGAGCAACTGAAAGGAGACTTGCTTGCTGCTTTTGGTGATGTTATAAGGttgcg

Function

GO:

id name namespace
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:2000058 regulation of ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022269 True 614 lncRNA 0.48 3 49155860 49184484

Neighbor

gene id symbol gene type direction distance location
XLOC_011060 FQ976914.1 coding downstream 241103 48791226 ~ 48914757 (-)
XLOC_011061 NA coding downstream 334515 48820350 ~ 48821345 (-)
XLOC_011059 notchl coding downstream 481922 48645217 ~ 48673938 (-)
XLOC_011058 rad21a coding downstream 725588 48409066 ~ 48430272 (-)
XLOC_011057 eif3ha coding downstream 755221 48282321 ~ 48400639 (-)
XLOC_011063 NA coding upstream 30994 49215478 ~ 49222093 (-)
XLOC_011064 NA coding upstream 51924 49236408 ~ 49237101 (-)
XLOC_011065 satb1b coding upstream 208716 49393200 ~ 49505275 (-)
XLOC_011066 efhb coding upstream 445402 49629886 ~ 49646625 (-)
XLOC_011067 znf385d coding upstream 544855 49729339 ~ 49846359 (-)
XLOC_010626 CR392024.2 misc downstream 28260685 20895112 ~ 20895175 (-)
XLOC_011056 NA non-coding downstream 935550 48219366 ~ 48220310 (-)
XLOC_011055 NA non-coding downstream 1099368 48043384 ~ 48056492 (-)
XLOC_011054 CR388140.2 non-coding downstream 1212603 47943143 ~ 47943257 (-)
XLOC_011049 NA non-coding downstream 1851191 47302446 ~ 47304669 (-)
XLOC_011068 CR855313.1 non-coding upstream 810994 49995478 ~ 49995594 (-)
XLOC_011073 LO018246.1 non-coding upstream 1454186 50638670 ~ 50638786 (-)
XLOC_011077 FP243388.2 non-coding upstream 1750706 50935190 ~ 50935306 (-)

Expression


Co-expression Network