XLOC_011065 (satb1b)


Basic Information

Item Value
gene id XLOC_011065
gene name satb1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 49393200 ~ 49505275 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021587
ATGGAGCATCTCAGCGAAACATGCCTGGGGAAGGAGAACTGCGAGATGGTCAACAGTTTGAACGACAGCAAGGGCCCTCCGGCTAAACTGGCCCGTCTGGAGCAGAACGGGAGCCCACCGGGTCGCTCTCGTCTGGGCAGCACTGGAGCCAAGCTCTCCGGCGTGCCCTTTAAACCCCCTGGACATCATCTGAAGGCCTGCCACAAGAGGGGTAACATGCTGCCGGTGTTCTGTGTGGTGGAGCACTACGAGAGCCCGTTGGAGTTCGACAGCAAAGAGGAACACGCCGAGTTCGTCCTGGTCAGAAAAGACATGCTCTTCAACCAGCTCATCGAGATGGCCTTGCTCTCTCTGGGTTACTCGCACAGTTCAGCCGCACAGGCTAAAGGTCTGATTCAGGTGGGCAAGTGGAACCCAGTGCCTCTTTCCTACGTGACGGATGCGCCAGACGCCACAGTGGCGGACATGTTACAGGATGTGTACCATGTGGTCACGCTGAAAATCCAGCTACACAGTTGTCCTAAACTGGAAGACCTTCCTCCAGAGCAGTGGACCCACTCTACAGTAAGAAATGCGCTCAAGGAGTTACTCAAAGACATGAACCAGAGCTCTCTGGCTAAAGAATGTCCCTTATCACAGGTGCTGGAGCCTTCCACGTTTGGTTGCCAAGATTGTGCAAGTGTCCCTTTTTACAAATGCCCAGAGTTTGATAGAGTGGAAATGGACAGAATTGCTATAGAAATGGACGGTCTGTCAGATCTTTCTCCACCGGGAACCAATCACCTCAGCTTCAGCCAGCAGCCCATCCCGGGCAGCACTGCGGAGCAGGCCCCGTCCCCCCTGCCCGTATCCCACACCAGTCAAGCCCCTGGCCGAGCGCAGCTGCCCGGCCTGCACCCGGGCCTGGTGTCCACCCCCATCAGCCCTCAACTGGTGAACCAGCAGATTGTCATGGCCCAGATCCTCAACCAGCAGTACGCAGTCAACCGTCTCCTGGCTCAGCAGTCTCTGAGCCAGCAGTACCTGAACCACCCGCCGGTCAACCGTGCGCTCAACAAACCGCTGGAGGCGCAGGTGTCCTCCAACGCAGAGGTGTCCGCCGACATCTACCAGTGGGTGAGAGACGAGCTGAAGAGGGCAGGAATCTCACAGGCCGTGTTCGCACGCGTGGCCTTCAACAGGACACAGGGTCTTCTCTCTGAGATCCTTAGGAAAGAGGAAGACCCCAAAACGGCATCTCAGTCTCTTCTGGTCAACCTGCGAGCGATGCAAAACTTCCTGCAGTTACCAGAAGCCGAGCGAGATCGCATTTACCAGGAGGAGAGAGAGCGAAGTTTGACTGCAGCCTCAGCCATGGGTCCCGCGCCGCTTATTAGCACTCCTCCCTCACGCCCTGTACAGtgtgtgtgtgcgaaccAGATGCTGCTTTCCTcatgcatgtatgtgtgtgtgttttcacagcCCAGAAGAGAGGAGTGTAACAATGTGAGACCAGAAGACTGGAATCCCAGAATTCCAGTGGGCATCTCTCCTGTGAGTGCACATATGGTAAAGCCCAATCCTCTGAGCAGCGAGTGGAACGGTAAATCAGAGAGCTGCGTGTTAAACATCAACTCCTCCATCTACGACGAGATCCAGCAGGAGATGAAGAGGGCCAAAGTTTCCCAGGCCATGTTCGCCAAGGTCGCCGCTTCCAAAAGCCAGGGCTGGCTTTGTGAGCTGCTGCGCTGGAAAGAGGACCCATCCCCAGAGAACCGCACGCTCTGGGAGAACCTGTCCATGATCCGCCGCTTCCTCAGTTTGTCTCAAGTGGAGCGAGATGTCATTTACGAGCAGGAGAGCAATGGAGGACAGCAGCATCACGCAGACAGACCTCCTCACCTGATGCATGTGCCCACAGACCCTCTGCAGGCTCCCTCTCAGCTCCAGGTTCCTCTGCCCCTTCCTCACCCATCCCAGCCTCTCCTATCCCAGCAGCCGCTTCAACCCCTCCAGCAGCAGCATCAGCAGCAGACAGAGCCTCGTCTCCCCCCTCGACAACCCACCACCGCCTCCCCCGCCGAAACAGAGGACGAAACCCGCTGCAAGAGCCGCCAGCCCAACCGCATCTCCATGGAGGCCCTGGGGATCCTGCAGAGCTTTATCCAGGACGTGGGTCTGTATCCGGACGAGGAGGCCATACACACGCTCTCGGCACAGCTGGACCTGCCCAAACACACCATCATCAAATTCTTCCAGAACCAGCGCTTCTATATAAACCACGCCAAGTCCCCCATCGGCTttccaaacaacaacaacaacaacaaggacGAAGGTCTGACGGATTTTAAGGAGGCCGAGCTGATGACCGAGCTGGAAGAAAGCGTGCAGACCAACAACACCATGTTCTCCATTAAAATGGAAGAGCATCTGGCACCCGAGACGCACGTTCAGATTGAGCAGGAGGCTAAAGAGTAA

Function

symbol description
satb1b Predicted to enable DNA binding activity. Acts upstream of or within neutrophil differentiation. Orthologous to human SATB1 (SATB homeobox 1).

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0006338 chromatin remodeling biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7105 Predicted to enable DNA binding activity. Acts upstream of or within neutrophil differentiation. Orthologous to human SATB1 (SATB homeobox 1).

Ensembl:

ensembl_id ENSDARG00000062621

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021587 True 2457 mRNA 0.56 12 49393200 49505275

Neighbor

gene id symbol gene type direction distance location
XLOC_011064 NA coding downstream 156099 49236408 ~ 49237101 (-)
XLOC_011063 NA coding downstream 171107 49215478 ~ 49222093 (-)
XLOC_011062 NA coding downstream 208716 49155860 ~ 49184484 (-)
XLOC_011060 FQ976914.1 coding downstream 478443 48791226 ~ 48914757 (-)
XLOC_011061 NA coding downstream 571855 48820350 ~ 48821345 (-)
XLOC_011066 efhb coding upstream 124611 49629886 ~ 49646625 (-)
XLOC_011067 znf385d coding upstream 224064 49729339 ~ 49846359 (-)
XLOC_011068 CR855313.1 coding upstream 490203 49995478 ~ 49995594 (-)
XLOC_011069 nek10 coding upstream 609464 50114739 ~ 50157187 (-)
XLOC_011070 lim2.5 coding upstream 661146 50166421 ~ 50181206 (-)
XLOC_010626 CR392024.2 misc downstream 28498025 20895112 ~ 20895175 (-)
XLOC_011056 NA non-coding downstream 1172890 48219366 ~ 48220310 (-)
XLOC_011073 LO018246.1 non-coding upstream 1133395 50638670 ~ 50638786 (-)
XLOC_011077 FP243388.2 non-coding upstream 1429915 50935190 ~ 50935306 (-)
XLOC_011078 FP243388.1 non-coding upstream 1455971 50961246 ~ 50961362 (-)
XLOC_011080 NA non-coding upstream 1573392 51078667 ~ 51080430 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_00247732_00293880 SATB1 coding CI01000086 null 247732 ~ 293880 (-)
bowfin (Amia calva) AMCG00000732 satb2 coding CM030137.1 CM030137.1 1698213 ~ 1704869 (-)