XLOC_011066 (efhb)


Basic Information

Item Value
gene id XLOC_011066
gene name efhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 49629886 ~ 49646625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021588
GGAACGTAAACAAACACTGTCTGTCTGcggtgtgtttgtttttgtgaggtTTTAGACATAGAGTTGTAAATAAGTGCCGGCATGAGTGTCATTGAGCGGAATTCGTCCACCCGGAGACGCAGAGACGCGTTTCCATCCATCCGTGCGGCTGGAAAGCTCATTCCAATAGGTGACAGAACTAAGTCTTGTCTGCAAGAAATTACACCAAGGacTGTAACTCCACCAATGGTTAGAAAGTTTGTTCATTCTTTGCGGCCTCCTGTTGGGTCAGTTCGGGTCTTTCATGGAAGAGCAAATGACCCTGACATCGCCACCACTCTAGTTCATGGCGTGAACACTATATCGTCCATTAATGCTGGCTCAGTAATCAACCCTGCACCAAAAACACGCTTCCAGGAGAGGCTGCGTCAGCTACAAGAAATCAGTCATGCCACCAATCAGAAAGCTCCTCTCGGGAGGTCACAAGTTCAAGGCCCTGGTTTACCAAGCTGGCTTAACCCCGAGAAAACTACTTTTGGTGTCACAACACTCTGTTTTTCTAATGGAGGTGAAGTCATCAATCCACCCAAAACTGCAGATGAGGTGAAGAGAGAAGCAGGCGAGGGACATCAGCTCTACATTCGCTCACACGGCTCTTACTTTGTAGGAGAGCATGTGGACAGGAAGTACAATTGGAGTCACTATGCAAGAGAAAGTAGGTTTGGTGTTCCTACACCTCATTATAATGATGGTAGAAACATCTCTAAATGTCTTCACTGGCCCTGTGACTCACTAATGCACAACAGCGCAAAATTAGTTCCGAAACGCTGCGACGACTTCAGAGAGAAGCCTCATCCACAAATAGGCAAAGTTCATGATCCAATTGCGGAGACATTAAACGTTCCCAGTGATCACACATTTGGAGTCTTGATGAAACCTGACAGCTTTGgcgCTGTCGACCTTCTCTATCAAACTCCACCTGGCGAATATTTGAAAGGTAAAGAGCGGCAGCGAGCACTAGTTAGCGCCGTCCGCCAGCACCTCAAGAAGTCCAACTACCAGAAATTCAGCTCATTACTGGAAGCGTTCAGATACTACGACAAGAAAGGTCTAGGAAAGATCGATAAGGAGGATCTCAGAGAAGCGTGCCACCAGTTTAACATGATCATCAGTGACCCGCTGCTGGATGAGCTCATGGATTACTGTGATGTTCATAAAGACGGGCTCATCGACTTTGTGGAGTTTTCCAATTTTCTCAACTGGAAAGACAAAATGCCGATCAGCAGGATGGAGCAGGATATTCTCACTGGAGAGCGAGTGGCATGGACGGCTCCAGCCAACATGCACCGAACACACCTGCCGGAATCCAGCACTGTAAAACCTCTGGTTAAACCCGAAGATTTGGAGCCTGTTGAAGAGGGAAGCACCAAAAAGACACCCAAAACCCTGTCAAGACCGAGAACCGCGCAGAGCGACTTCATTACCTCTAATTCTCTTATCAATGCTGTTGTTGGCGGTCTTTCCACGTCCAATTATCACACATATGGAGTGCCATCAATACGGGCTGATCTTCCTGCTCCTCGTATCAAAAGCATCAGCGACAGGACAAACTACGGAGACCAAGCGACGGCTCGTGATTTGCTGCATCCTCCTCTACATTCCCTCTACGGTGTCCATGAACAAGAGTTTTTCAGTCCTCGCACCAAAGAGGAGATTGCACAGATTTTCCAGAAAGTGGGTCTGAACACTGCTGATGAGATGTTTGAAGAGGCCTGGAGGCTGGCGTCTATGAGAGATCCTGATGGTGATGTATCTGTGGAGAGCTTTCGAAACGTTCTTGGTGAATTGCAGGCTAATTAAACTTAAAGTCAGATTCCTTTAA

Function

symbol description
efhb Predicted to enable calcium ion binding activity. Orthologous to human EFHB (EF-hand domain family member B).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-091001-1 Predicted to enable calcium ion binding activity. Orthologous to human EFHB (EF-hand domain family member B).

Ensembl:

ensembl_id ENSDARG00000069703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021588 True 1861 mRNA 0.47 13 49629886 49646625

Neighbor

gene id symbol gene type direction distance location
XLOC_011065 satb1b coding downstream 124611 49393200 ~ 49505275 (-)
XLOC_011064 NA coding downstream 392785 49236408 ~ 49237101 (-)
XLOC_011063 NA coding downstream 407793 49215478 ~ 49222093 (-)
XLOC_011062 NA coding downstream 445402 49155860 ~ 49184484 (-)
XLOC_011060 FQ976914.1 coding downstream 715129 48791226 ~ 48914757 (-)
XLOC_011067 znf385d coding upstream 82714 49729339 ~ 49846359 (-)
XLOC_011068 CR855313.1 coding upstream 348853 49995478 ~ 49995594 (-)
XLOC_011069 nek10 coding upstream 468114 50114739 ~ 50157187 (-)
XLOC_011070 lim2.5 coding upstream 519796 50166421 ~ 50181206 (-)
XLOC_011071 vsig10l coding upstream 536565 50183190 ~ 50203058 (-)
XLOC_010626 CR392024.2 misc downstream 28734711 20895112 ~ 20895175 (-)
XLOC_011061 NA non-coding downstream 808541 48820350 ~ 48821345 (-)
XLOC_011056 NA non-coding downstream 1409576 48219366 ~ 48220310 (-)
XLOC_011073 LO018246.1 non-coding upstream 992045 50638670 ~ 50638786 (-)
XLOC_011077 FP243388.2 non-coding upstream 1288565 50935190 ~ 50935306 (-)
XLOC_011078 FP243388.1 non-coding upstream 1314621 50961246 ~ 50961362 (-)
XLOC_011080 NA non-coding upstream 1432042 51078667 ~ 51080430 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_00357753_00361658 EFHB coding CI01000086 null 357691 ~ 361658 (-)