XLOC_011067 (znf385d)


Basic Information

Item Value
gene id XLOC_011067
gene name znf385d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 49729339 ~ 49846359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021589
GTGTAAtcctcactactcttgagtacttttaaaagggctactttctACTCATACTtgtagtaatatttacaacagataactCTACTTGCACGACATTTTGGGGGCAAgtgatggtacttttacttgagtatggttTTAGTACTGTTTTCACCACTGATTGTTTTGCAGGTGGAGATGCAGGAGCTCTCGTGGCCCCTTCATCACCCTCTTCGGCTCCAGCGTCTGGCCCCAGCACTGACTCCACAGAGTCTGCTTCAGTATCAGGAGAAGAGGACGGTTCCTCCTGCACACCCGTCCCGCCTGAATCAGAGGAGAACCACAGCGGGACAAGTCCAGAGTCCGAGACGGAGGATGAGAAAGCCCTGCGTCTGCTCTACTGCTCTCTCTGTAAAGTGGCGGTGAACTCTGTGTCACAGCTGGACGCGCATAACAGCGGCACCAAACACAAAACCATGCTGGAGGCTCGAAGCGGCAACGGCTCCATCAAATCCTTCCCCAGGACTGGGCAGAAGAGCAAACTCCCCACCGATGCCTCTAAAACAGCAGACACCGGCCTGCAGAACAAGACATTTCACTGTGAAACCTGCGACGTGCGTGTCAATTCAGAAACGCAGCTCAAACAGCACATCAGCAGCAGACGCCATAAAGACAGAGCTGCAGGAAAACCAGCCAAACCCAAGTTCAGTCCCTACACCAAAACCCAGAGAGGAGCCAGCAAACAGACAGTGAAGATGCCGGTTGGTAAAGATCTGTGCTCTCCTCTGACCACCAGAATAATGCCGTCCCACCTGGCAGCTGTCGCGGCAGCAGCCGCCTCCATTGGCTCCACCTTCCCGCTGCGTGCCTGTCATAACCCCACCCTCTTTCAGACTCAGTCCCTCCCCGCTGCGCTGCTCCGCCCTGCTCCAGGGCCAATCAGAACTGCTCACACACCTCTGCTCTTTGCCCCCTACTGA
>TCONS_00021590
ttcatttattttaatgaaattaattttattttactttaacaatatttaattatctcttatttattttattttatttatttattttaattatttattttttattttgattatttttaagttactttattttttcttgtactttatttatttttttaattaactttttttatttattttaatttatttgttcatttacttatttattttacttttttttactttatttatttagctatttcttatctctctatttattttttttattttttttacttatttaatttatttagttaatctttatttatttatttttaaaaatatttatataatttattttaaatgaaattctgGACCTCAACATGAATTTATacctattttgtattatttatttgataatttatgtcatatacatttttttattttattttagatttttatattattattattatttgaatataataaaatatccaTTTGTTTAACATTTCTTAATGGCTTTATGTTTAGTGTGTTTTGTGTCCTCTTCATTGTACAGCACCAGTGGTCCTGCATATGTAGGGAGGTCGTTAGATTTTGATGCAGATCcagacgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacgcacacacaaacacacatacactgttcGCTGGTTATATGTCTTCCAGCAGCTTGTTTGCTGGTGTCTTAGTGGTCTGTTGTTTCTAACACCTGGTCTGGGTTGGCCCTCTCCTCGGGTTGGCCCTCTCTGTGTTTTCCAGAGCCAGGCTTTGGCCCACTACAAAGGCACCAAACATGCCAAGAAGCTCAAATCCTTGGACGCCCCCAAATGCCTGAAACACAAGAGCTCCTCAGCAAGCAGGGAAAACACCAACAAGGAGCTTCCCAAAGGCCTCGTGCCCTCTACAGTGGCCTACAGTGAGGACAGAAAAGGTGGAGATGCAGGAGCTCTCGTGGCCCCTTCATCACCCTCTTCGGCTCCAGCGTCTGGCCCCAGCACTGACTCCACAGAGTCTGCTTCAGTATCAGGAGAAGAGGACGGTTCCTCCTGCACACCCGTCCCGCCTGAATCAGAGGAGAACCACAGCGGGACAAGTCCAGAGTCCGAGACGGAGGATGAGAAAGCCCTGCGTCTGCTCTACTGCTCTCTCTGTAAAGTGGCGGTGAACTCTGTGTCACAGCTGGACGCGCATAACAGCGGCACCAAACACAAAACCATGCTGGAGGCTCGAAGCGGCAACGGCTCCATCAAATCCTTCCCCAGGACTGGGCAGAAGAGCAAACTCCCCACCGATGCCTCTAAAACAGCAGACACCGGCCTGCAGAACAAGACATTTCACTGTGAAACCTGCGACGTGCGTGTCAATTCAGAAACGCAGCTCAAACAGCACATCAGCAGCAGACGCCATAAAGACAGAGCTGCAGGAAAACCAGCCAAACCCAAGTTCAGTCCCTACACCAAAACCCAGAGAGGAGCCAGCAAACAGACAGTAcgttctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagttaa
>TCONS_00021591
ttttaCTGTACTTGGAGCTGTGTTACACTCTAcatagaaggtcattttcaaaatctTATATTTTTTTGGGCTCTTTAAGTTCTTTACCCCCTCACATGTGTGTCCGCATTTACTAACCCCATACTTTTGTAACCTTCACATgtgattttgtacattttatctACTAATTTGTACCTTTTTAGGCCCAAATGTGAACTTGATAACTACAAAAATGTATCTTGTAGCACTCCAGTGACAGgttctgtactttttttttttttttttggagggtgCAGGTGCAGAGTTTGTTCCATGACCCGTCTCTGTTTGTCCTCCTCAGGTAATGCTTGTCAGAGTGGCCTAGTGCCAGCGCTGGTTCGAGCTCCTCTTCCCGCTGTGCCCTCCTCTTTGGGCATGAAGCACTTTGTCCCTTTTGCTTTGGATGGCGGCTCTGCGCTCAGCCTCATTCCCAGCTTCAGCAGCATGAATGCAGTTCAGAAAGCTGTTTTGCATCACACGATCAGCACTTCGGCCCCCTCAAAAAGAAAAGCAATGTCGTGTGGCGTTTGCCATCTGAGGTTCAACTCGCAGAGCCAGGCTTTGGCCCACTACAAAGGCACCAAACATGCCAAGAAGCTCAAATCCTTGGACGCCCCCAAATGCCTGAAACACAAGAGCTCCTCAGCAAGCAGGGAAAACACCAACAAGGAGCTTCCCAAAGGCCTCGTGCCCTCTACAGTGGCCTACAGTGAGGACAGAAAAGGTGGAGATGCAGGAGCTCTCGTGGCCCCTTCATCACCCTCTTCGGCTCCAGCGTCTGGCCCCAGCACTGACTCCACAGAGTCTGCTTCAGTATCAGGAGAAGAGGACGGTTCCTCCTGCACACCCGTCCCGCCTGAATCAGAGGAGAACCACAGCGGGACAAGTCCAGAGTCCGAGACGGAGGATGAGAAAGCCCTGCGTCTGCTCTACTGCTCTCTCTGTAAAGTGGCGGTGAACTCTGTGTCACAGCTGGACGCGCATAACAGCGGTGAGCTTATCCACAGCACATGACTTTTAGACTAGTGGACTTAAACACTCCTTGAAGACGAGAGAACGATTTTAAGAGTTAATGCTTAAATCAGACCAGGTCACATGCGCCCCCTGGACTTCTTCGATCAGCCCGGGTCaagtatttatttaatctaaattcAACCGCAAACAGAGCCTTGCATTTCACAGGTCTTTACAAAAACGATGCACGAGTCAACAAAAGGGGGCTTTCACATATAGCGTCTTATGCATGCTCCGTTATATGGGAAGGGATGCACATGCAATATGTCACGCTCACGTTTCCAGGCACCGCAAGATGAAAAAAATTGAAACATTTCAGAGCGCCGGGAgggaatgaatgatgaatgaataaataaataaataaataaataaataaataaaaataaataaataaactaaataaaaattaaataaagtaataaataagtgaataaaaaataaataaataaataattaaataaacaaataaaaaattaattaaaggaataaataaatgaataaaaaataaagaaataaagaaataaataaaaataaataaagaaataaaaattaaataaagaaataaataaatgaataaaaaataaataaataaataaataaataaataaaaattaaataaataaataaatgaataaataaataattaagcaaacaaacaaccctgtGGCGTTTATACGAAGTTGATATTGTGATGCTTGTCTTTTAAATACTTTGTGTAaagttgattattttttaaagagcccctattttgcattataaaaggtcatattttggttttggtggtccccaacaacaggctgatattcGTGTTGATATTTGGGCTGATACACTTTCAtcgtcttataatctgcatttatttttacataattatctcagcaactcccatatgatttgttcagcgattcatttgttcccaaacccctcttcagcatgaagctaatctgcgctgattggtccaacaacccagtctgttgtgattggtcgactgcattcagcGCGAGatggagagaaatgcccaccacagctatgaagtagcagaaagtatgtgagagcccaatgcaggaattcATTAAAGCATTGTAGTTAAACACCAGTGTATTTCTCTAcgcttaaccctaaccccaatgaACATGCATTCAGTATTACTCCACAGTAGctaaagttgaactattttgaaaaccgACTGCACCGCGTGTGTGTAGGAACAACTGATATGGCCATAACAAAGACAAAACGACAGAGGATCGCGAGTTCAGAAACTCATTTTaatcagtaaaggaagaagcacgcgtcacgttttaaacctgtttttgaaagtgatatgtgaacagccccatacagatttaacatGAGAGATGCAATACAAGCACGGATCTATAATCGATACGGGATTACAAGCCGCGCGGGGtgattacaacttataacacacaattaaaacacattttgcaaactacaccaaactaggcaacaattttaatgacacttacatgtcatgatccggaggaagaagaaactggtccatttgaACTGTTACAGTTACtaacaaagtccctgtcaaagtctgtcAACGTCCCTTGCatcatagtctctgctgctccttcaatagcaaaTGACTGGCGAATCCTgcattgcagcgtaggttattgtatcaaaaatgagaaaaatgacaggaacaaacacagcactgggTTATTGTAACGAGGAGTCTGAcatggagggatccatttgcagtatatttatttaatcacaATCATACAATACGCACTTGCGTGTGAACTCACATCAAACATAGTTAGTATGGGTCTGGGCTGGCGGCTGGCTGTCAAGGAGTGtgatagcaggcatgggtcagaggtaggcggcgtggttcagaagCAAAATAGCAGGCTGGGTTCAGGGCAGCCAGCGTGGATCAAAGTCAAGGGTACAAGCAAGGTTcgaggcaggcggcaggcaaggcaAGGTCAAGATacagtccaggtaatacacgggagatcaggcaaggaataacgctcagtaatgtcagacagggcagaacaagacttcgcacaggactgagtgtgtgagctgcttatatgtgtgaggTTGTTCATCAGTGTGATGTGTTGCAGGTGTGTGTGGCAATCAGTGTTTGTGCATGACGTAATGGCTAGAAGTCtggtgatggtgacctctgctggccagcgaggggaatgactgggactgaGTCGGTGACAGCTATACTAATGTATTGCtgtgaaaataaactttaaccctttattctccacagccaaatctccatctgtcagtgatcgtcatctttgcGTCATAATCAGTCCCATGATCCCCCACGCctctgctagtgtctgaagggaaaggagCATTTACGTTTTACCGGATCTGGAACTACATATTTGATGATGTACCATATCAATGCTGACATACAgccaaaagatccgaacccaactcgattcatatatttgactctgagtcgactatttcatttttttttttttaaacaaattaactgtATCGGTCTGGCCCTCTAAAACCACCCcagaaaaaatcatgaaaaatcatGACACTGAAAACTGcagtaataatgatgatgattaatttttaaatgacagaaatgtagcattaaaaataaaaacctaaactGTAATCATATCTGACAATTCTACAGTGCGTTTGAGCAAATGAGTGAAGCTCTGGTGAGCACTAGAGACTTTCAATATTTTGCCAACCCAAACTGTTGTAAGAAAGTACATCCATCCGAACTTTTCCCCAGCTCTGAAACATGTTTCGCTTCAGATAGATGTTTTGATGTGGAACTGCTTGATTTGCTTCACGGTTTGGAACTTCTGAAAGAGTTTTAAACACATGCTTATGGAGAAAATGAATCATAAAATACTTGTGAAACCAGAGCAGTCACAGCGGCTGCTTTTCCTTCACTGTTTGATCCAGTGCTTCTATTTATAATCTTTTAACTTCAGATTTTAGTTTTGTACCGAAATGGATACACGTCTTTAAAACTATTAGCAAGCAAACACCTTTAAGCATAAATTTAGTCACTCTTAGCATTTAATTTTAtacttaaagtataaaaataaaaatgtgcattattctgttatcattttctcaccctttaCTCGTttaaaacctttataagtttctgtcttctgttgaacacaaaataaggtcTTTTTACAAATGATATAAATGcgtaaaaatatttagaaaaatgttggaaacctgtaaccattgacttccattagttTTTGCAACTATGAAAGTAAatgttactggttttcagctttcttctttcttttttgtgttcaacaaaagaaagaactcACAATAAGGCTGAGCAAATAGTGGAAAAATTAAAATTGTGAGTGAACTATCCTTGTATAATGCAAACAAACATTTTCCACAAAAATATCTTGTACACATAAACGATAAAGACCCTATCTTGCGGTTTTGTTTTGCTCTATCAAAGGCATATCATTATTATGATTCACTttatcatttacttgtttaaaaaccTTTATGAGC

Function

symbol description
znf385d Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ZNF385D (zinc finger protein 385D).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130201-2 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ZNF385D (zinc finger protein 385D).

Ensembl:

ensembl_id ENSDARG00000086162

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021589 False 956 mRNA 0.54 4 49729339 49746832
TCONS_00021590 False 1610 mRNA 0.40 4 49735933 49781481
TCONS_00021591 True 4569 mRNA 0.39 4 49742838 49846359

Neighbor

gene id symbol gene type direction distance location
XLOC_011066 efhb coding downstream 82714 49629886 ~ 49646625 (-)
XLOC_011065 satb1b coding downstream 224064 49393200 ~ 49505275 (-)
XLOC_011064 NA coding downstream 492238 49236408 ~ 49237101 (-)
XLOC_011063 NA coding downstream 507246 49215478 ~ 49222093 (-)
XLOC_011062 NA coding downstream 544855 49155860 ~ 49184484 (-)
XLOC_011068 CR855313.1 coding upstream 149119 49995478 ~ 49995594 (-)
XLOC_011069 nek10 coding upstream 268380 50114739 ~ 50157187 (-)
XLOC_011070 lim2.5 coding upstream 320062 50166421 ~ 50181206 (-)
XLOC_011071 vsig10l coding upstream 336831 50183190 ~ 50203058 (-)
XLOC_011072 etfb coding upstream 368460 50214819 ~ 50229274 (-)
XLOC_010626 CR392024.2 misc downstream 28834164 20895112 ~ 20895175 (-)
XLOC_011061 NA non-coding downstream 907994 48820350 ~ 48821345 (-)
XLOC_011056 NA non-coding downstream 1509029 48219366 ~ 48220310 (-)
XLOC_011073 LO018246.1 non-coding upstream 792311 50638670 ~ 50638786 (-)
XLOC_011077 FP243388.2 non-coding upstream 1088831 50935190 ~ 50935306 (-)
XLOC_011078 FP243388.1 non-coding upstream 1114887 50961246 ~ 50961362 (-)
XLOC_011080 NA non-coding upstream 1232308 51078667 ~ 51080430 (-)

Expression


Co-expression Network