Fish Transcriptome and Expression Database

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model fish

XLOC_011068 (CR855313.1)

Basic Information

Item	Value
gene id	XLOC_011068
gene name	CR855313.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	49995478 ~ 49995594 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021592
agtcacagccatatcaccctgcgtCCCAAAatcggttactcactgaagctaagcagggctgagcctggtcagtacctggatgggagaccacatgggaaaactcgATTGCTGTTggta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109203

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021592	True	117	rRNA	0.52	1	49995478	49995594

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011067	znf385d	coding	downstream	149119	49729339 ~ 49846359 (-)
XLOC_011066	efhb	coding	downstream	348853	49629886 ~ 49646625 (-)
XLOC_011065	satb1b	coding	downstream	490203	49393200 ~ 49505275 (-)
XLOC_011064	NA	coding	downstream	758377	49236408 ~ 49237101 (-)
XLOC_011063	NA	coding	downstream	773385	49215478 ~ 49222093 (-)
XLOC_011069	nek10	coding	upstream	119145	50114739 ~ 50157187 (-)
XLOC_011070	lim2.5	coding	upstream	170827	50166421 ~ 50181206 (-)
XLOC_011071	vsig10l	coding	upstream	187596	50183190 ~ 50203058 (-)
XLOC_011072	etfb	coding	upstream	219225	50214819 ~ 50229274 (-)
XLOC_011073	LO018246.1	coding	upstream	643076	50638670 ~ 50638786 (-)
XLOC_010626	CR392024.2	misc	downstream	29100303	20895112 ~ 20895175 (-)
XLOC_011062	NA	non-coding	downstream	810994	49155860 ~ 49184484 (-)
XLOC_011061	NA	non-coding	downstream	1174133	48820350 ~ 48821345 (-)
XLOC_011056	NA	non-coding	downstream	1775168	48219366 ~ 48220310 (-)
XLOC_011077	FP243388.2	non-coding	upstream	939596	50935190 ~ 50935306 (-)
XLOC_011078	FP243388.1	non-coding	upstream	965652	50961246 ~ 50961362 (-)
XLOC_011080	NA	non-coding	upstream	1083073	51078667 ~ 51080430 (-)
XLOC_011087	CABZ01074290.1	non-coding	upstream	1759798	51755392 ~ 51755506 (-)

Expression

Co-expression Network