XLOC_011070 (lim2.5)


Basic Information

Item Value
gene id XLOC_011070
gene name lim2.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 50166421 ~ 50181206 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021594
GATGTACAGCTTCATGGGAGGGGGTTTGTTTTGTGCCATCGTGGGCAACATCCTGCTGGTTGTTTCCACTGCTACCGACTACTGGATGCAGTACAGACTGTCAGGCAGCTTCGCTCACCAGGGCCTGTGGAGATATTGCATGTCTGGCAAATGCTACACACAGACTGACAGCATCGCGTACTGGAATGCAACACGGGCCTTCATGATCCTGTCAGCCATGTCGTGTTTTGCTGGAATAATCGCAGGAATCCTCTCCTTCGCTCACTTCTCCGCCTTCGAGAGGTTCAACCGTTCCTTTGCAGCAGGAATCATGTTTTTCATTTCCACTCTGTTTGTTCTGCTGGCGATGGCCATTTACACCGGCGTGACTGTCAACTTCCTGGGAAAGCGTTTCGGGGACTGGAGATTCTCCTGGTCCTACATTCTGGGCTGGGTTGCTCTGCTCATGACCTTTTTTTCAGGTATTTTTTACATGTGTGCCTACAGGATGCATGAATGCAGAAGAGTGGCCGGCACTCGCTAAAACCAGAGACAAGCAAACATTCATCACCCAAGTATTTGATTATCTGATCCCACTTATAAAATACAGAGAAAAAAGACACTGTCAGATTTCACTAGTTGCAATAACAACAGAACTCATTTAAGATTTGAATCACTTGAATGAACTGAAGCATTTTTCATGCACAGAGTGAAAAATCTCTAATAAAAtctgttctcttcatttattgttgttttgtttgtttaatgtttggCTTGGAGGAACCGATTGAATGTTTGCATGATacgtaaaaaatatatatacatgaaATAAATGGTAAATTTTAAGACCCTGTGATTTGCATAATGCATAAAACACTGACAGAAT
>TCONS_00021595
atcatggttGCGTTCGCCGGAGTGTCACGCTGGATCCGGAGAGCAGGCCTGAATGAAAGTGTGCGCTTCAGCATGTTGCATTGACCGGCGCAGTACTGCAAGCCTCTGCACATCACAGTTCCAGAACGGCCAATGCAACAACAAAGAGAGCGTCAGGACGAGCGTCCCCGCGTGCCTCCGACACCATCAAGCTGAAGTGCATTTGTTCTGTGTGGCTCGCTCTAAAGGATTTTGCCACCATCGACAGAAAAAGCAGAGGGCATAACTTTTTGGAAGTGGGCCTGGCGGATCCTTTTTGACGTTCGGCTCACTGCGGGAtacactttctctctcttttcctcTGGGAAGGTCAATACTTGAGCAGCTTCATTTATCCTGAAGACTTCAGGATGTACAGCTTCATGGGAGGGGGTTTGTTTTGTGCCATCGTGGGCAACATCCTGCTGGTTGTTTCCACTGCTACCGACTACTGGATGCAGTACAGACTGTCAGGCAGCTTCGCTCACCAGGGCCTGTGGAGATATTGCATGTCTGGCAAATGCTACACACAGACTGACAGCATCGCGTACTGGAATGCAACACGGGCCTTCATGATCCTGTCAGCCATGTCGTGTTTTGCTGGAATAATCGCAGGAATCCTCTCCTTCGCTCACTTCTCCGCCTTCGAGAGGTTCAACCGTTCCTTTGCAGCAGGAATCATGTTTTTCATTTCCACTCTGTTTGTTCTGCTGGCGATGGCCATTTACACCGGCGTGACTGTCAACTTCCTGGGAAAGCGTTTCGGGGACTGGAGATTCTCCTGGTCCTACATTCTGGGCTGGGTTGCTCTGCTCATGACCTTTTTTTCAGGTATTTTTTACATGTGTGCCTACAGGATGCATGAATGCAGAAGAGTGGCCGGCACTCGCTAAAACCAGAGACAAGCAAACATTCATCACCCAAGTATTTGATTATCTGATCCCACTTATAAAATACAGAGAAAAAAGACACTGTCAGATTTCACTAGTTGCAATAACAACAGAACTCATTTAAGATTTGAATCACTTGAATGAACTGAAGCATTTTTCATGCACAGAGTGAAAAATCTCTAATAAAAtctgttctcttc

Function

symbol description
lim2.5 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-94 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000041295

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021594 False 865 mRNA 0.43 4 50166421 50175069
TCONS_00021595 True 1108 mRNA 0.48 5 50166566 50181206

Neighbor

gene id symbol gene type direction distance location
XLOC_011069 nek10 coding downstream 9234 50114739 ~ 50157187 (-)
XLOC_011068 CR855313.1 coding downstream 170827 49995478 ~ 49995594 (-)
XLOC_011067 znf385d coding downstream 320062 49729339 ~ 49846359 (-)
XLOC_011066 efhb coding downstream 519796 49629886 ~ 49646625 (-)
XLOC_011065 satb1b coding downstream 661146 49393200 ~ 49505275 (-)
XLOC_011071 vsig10l coding upstream 1984 50183190 ~ 50203058 (-)
XLOC_011072 etfb coding upstream 33613 50214819 ~ 50229274 (-)
XLOC_011073 LO018246.1 coding upstream 457464 50638670 ~ 50638786 (-)
XLOC_011074 si:ch73-90p23.1 coding upstream 707912 50889118 ~ 50897887 (-)
XLOC_011075 CU855821.1 coding upstream 736707 50917913 ~ 50918908 (-)
XLOC_010626 CR392024.2 misc downstream 29271246 20895112 ~ 20895175 (-)
XLOC_011064 NA non-coding downstream 929320 49236408 ~ 49237101 (-)
XLOC_011063 NA non-coding downstream 944328 49215478 ~ 49222093 (-)
XLOC_011062 NA non-coding downstream 981937 49155860 ~ 49184484 (-)
XLOC_011061 NA non-coding downstream 1345076 48820350 ~ 48821345 (-)
XLOC_011077 FP243388.2 non-coding upstream 753984 50935190 ~ 50935306 (-)
XLOC_011078 FP243388.1 non-coding upstream 780040 50961246 ~ 50961362 (-)
XLOC_011080 NA non-coding upstream 897461 51078667 ~ 51080430 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 1574186 51755392 ~ 51755506 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_00573050_00574400 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding CI01000086 null 572965 ~ 574400 (-)