XLOC_011074 (si:ch73-90p23.1)


Basic Information

Item Value
gene id XLOC_011074
gene name si:ch73-90p23.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 50889118 ~ 50897887 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021600
AGGGACATATTCACATCTGACTTTGTGCTGGTGGACTGACTTCAGGTTTCCATACTTGCCTCTTAGCGAAAAATGGCGTGGACGGTGCATCTCAGTAACCTGGTGTTGGGTGTGTACGGCTTCACGCTGGTCACAGGCCTTCCCGCAAACATCTTGGCTTTCTACACGTTCTTCCAGAAGGTTCGGCAGCGCTCCACCCCGATGGACGTGCTGCTACTCAGTTTGACCATCTCTGACCTGGTCTTCCTCTTCTTCCTGCCCTTCCGCATGGTGGAGGCGGCCAACATGAAGTGGACACTGCCATATTTCCTCTGCCCGCTGTCGGGTTTCATCTTCTACTCCACCATCTATAACAGCACCTTCCACTTGACGGCCATCAGTGTCGAGCGATACCTCGGTGTGGCCTTTCCTATTAAATACAAACTCAAACGCAACCCCAGAAATGCGTTGATCGCCAGtgttgtgttttggatcatgtCAATGGCGCACTGCAGTATCGTCTACATCATGCAATACCACAATCATTCCAACCCAAACTTCACCGATCCGTCAACGCGAGACACTTGCTATGAAGAATTCAGCCCTGAACAGCTGCAGATCCTCCTTCCGGTCCGACTAGAGCTGTTTGCAGTGCTTTTCTGCACGCCGTTCCTCATCTGCTGCTTCTGCTACATCAAATTCATCCACATCCTCTCCAATCTGCCCAGCATCAATGCTAAGAAGCGTTATAGAGCGATCGGGATGGCACTGGGCACACTTTTGGTCTTCATTATCTGTTTCATGCCCTACAACATCTCGCATGTGGTTGGATATGTCAACAGGCAGAGTCCAGACTGGAGGGTTTACGCTTTACTCACGAGCACATTTAACGCATGCCTGGATCCGTTCATCTTCTACTTCTCGTCT

Function

symbol description
si:ch73-90p23.1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-421 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097901

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021600 True 906 mRNA 0.50 2 50889118 50897887

Neighbor

gene id symbol gene type direction distance location
XLOC_011073 LO018246.1 coding downstream 250332 50638670 ~ 50638786 (-)
XLOC_011072 etfb coding downstream 659844 50214819 ~ 50229274 (-)
XLOC_011071 vsig10l coding downstream 686060 50183190 ~ 50203058 (-)
XLOC_011070 lim2.5 coding downstream 707912 50166421 ~ 50181206 (-)
XLOC_011069 nek10 coding downstream 731931 50114739 ~ 50157187 (-)
XLOC_011075 CU855821.1 coding upstream 20026 50917913 ~ 50918908 (-)
XLOC_011076 si:dkeyp-97a10.3 coding upstream 28568 50926455 ~ 50952266 (-)
XLOC_011077 FP243388.2 coding upstream 37303 50935190 ~ 50935306 (-)
XLOC_011078 FP243388.1 coding upstream 63359 50961246 ~ 50961362 (-)
XLOC_011079 ago3a coding upstream 104070 51001957 ~ 51072406 (-)
XLOC_010626 CR392024.2 misc downstream 29993943 20895112 ~ 20895175 (-)
XLOC_011068 CR855313.1 non-coding downstream 893524 49995478 ~ 49995594 (-)
XLOC_011064 NA non-coding downstream 1652017 49236408 ~ 49237101 (-)
XLOC_011063 NA non-coding downstream 1667025 49215478 ~ 49222093 (-)
XLOC_011062 NA non-coding downstream 1704634 49155860 ~ 49184484 (-)
XLOC_011080 NA non-coding upstream 180780 51078667 ~ 51080430 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 857505 51755392 ~ 51755506 (-)
XLOC_011088 NA non-coding upstream 977484 51875371 ~ 51889734 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G298208 NA unknown CI01000086 null 947191 ~ 980110 (+)
mexican tetra (Astyanax mexicanus) G263991 LOC108442747,LOC108442743,LOC108442749,LOC108442748 unknown NW_019171843.1 APWO02001441.1 50084 ~ 50310 (+)