XLOC_011076 (si:dkeyp-97a10.3)


Basic Information

Item Value
gene id XLOC_011076
gene name si:dkeyp-97a10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 50926455 ~ 50952266 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021602
GGCTAAAACAAAAAGCGTGTAGTGAAACCAAACGCGGATATATATGACAGGAAAATGAAAACCAGGAGAAAACCGCATAgccCTCCAGACTGACATGAACGCACTTCTTCATCCTTTTGTAGTTTTGTCTTTGACAAGTTTTCCATTGGCAGTTGTATGTCTGAGCCCTGTTCCTGTTCAGTGTTCGACGTCTCCATTGCTGGTGGCTTCCAGAGCGACTGCAGTGTTTGAGGTGCAGACTGTGCCAAATGTGCCCCTCATCAGATGGACGGACAGCGCAGCCACTACACTGGCCATGTGGGTGAACGGTGGGCCCGTCCTGATGCCGGTTCAGCAGTTCCAGGGCAGGATCACAATATCTGCCACCCAGTTCACCATCAGCAGCTGCCAGATCAGCGACTCTGGAAACTACAGCGTCTCTGTCGAACCCTCGTCTACCTCTGGACTCAGTGTGAACACGTGTTCAGTGCAGCTCAAGGTGTTCGGAGGGAATGTGTCTGTGAGCTGCAGCTGGACTGCGGGCTCTCAGGTCAGTGTGGTTTGGGGGAAAGCAGGAGCTCCTCTATCCTCTGATTCCCACATCAGCATCAGCTCTGGATCTCTGCTCATCAACTCGGCCAGCAGACAAGACTCTGGACAATATTCCTGTACTGTCAGCAACCCCGTCAGCGCTCAGACAGCCAAAGGAAACCTCAACATCTACTATGGTCCAGATTCTCCCCAGCTGACAAAGAGCTCTAATCAGTGTGTTGGAGGTGGAGACGCTACAGTGGGTCAGTCGGTGCTTCTCAGCTGTACATCTGCCTCTCTGCCTCCTGCATCCTTCACATGGCAAATCAACGGCCAGACGGTCAGCTCCAGCCAATCAGCGAGTGGCTCGCTGACCCTGCAgatcttctccaccaatcagagcgGCAGCTACGTCTGCACCGCACACAATGGCATCACGGGAGGGGCATCAAGTCAGCAGATTAACCTGGCCATTGTGGGTACGTGTCTCAGCGCTGGGGCTGTCGCGGGGATCGTCGTTGGCTGTTTTGTTGCGCTCCTCATTATTATCATTGTCATCATTGTGCTCCTGCGACAGAGAAATGTTGATCggagattaaaaaataatattgaacttCAGAAGACAAACCCGAATGAAGGAATGACAATAGCAAACAGAGCTCTTGTAAATGAAAACCACCCTGATCCAACATTACACAGCTCGCTCCCACAAAACGTCACTAATCACAACAATGGGAACATCAGCACAATGGCACAAAACGTAGCCAGAAACTCACTCCATCATAATGGCCATCTGAACACTGATGAATTCCAGCACAACTTCAGTGCAGTGCCAGACAATGGGCATCAAATCAGCAACAATTCAACAAATCCCAACAATGACCCTCCGAGGTCGTTCCCACAACACACTCCTAATATTGTCATACAAACGGGCAATTCCCAGCCTGTTCATGTAAGCCTCAATGCATTGCCACACACTGATCAGTTCAACACACAACCTCAAACAGTGCATGTCAACTTGAACACATACCCTCCAGATGCACAGCAGACAGCCTGGCAGCATGCAGACCAAAGAGAACTACATAGTCAACACATGAATGCAAATCCTCCACACACTGGATTACAGAACTCTAACCAACATAATAACCTCATGCAAACCAATGCAATACACCAACCTACAAACTCCAGCCATCGAAATCACTCTCAAAGTGCCTTGCAGAACTCAAGATCAGGCAATCAAACACTAAACAATGCTTCAGCAAATGGATCCCAACAAACCAACAGCCTGATTCAGACTGGCTACTCGCACCATTCCAACCAAACCAATGCAAACCGCAGAAATGCCAACATGCAGTCAACAAGAGAAGAGCAAACCGGTCGTTCAAACCGATATCGCACAAACAATCAGTTCGAGAACACGAACACAAACCTCCAGCAGATCCCTTGGGACCGATTGCGGGGAACGCCGGCGTATCCCAACCAAGAAGTGGAAAGCTCTGATAATAGTGAATCTTCAGACTGGATGCCGAGACCTCCTCAGCAGGCTAATCGAAGGGGTCGTTCTACTCAGAGACAACACGAAACCGAACTTTCCAGCAGGTCAACACAAGCTGCTTCTTCCCCCCAAAGAAGAGACATGCATAGACCAGCTATGCACAGCCAATTGCAAAACGACCCAGATTTGTGGAGTCAAGTGGTGGAGCAGATGCAAGTCCAATCGCCAAGACATGCATTACCTCAAACTGAATCCTCTTGGGGTCAAAATCCAATCCCTATTGGTCAACCTTTGGGAACAACAATACCTCAAACACATCCTCAGAGACACCACGAAGCTGAACTTTCTAACAGGTCAACCCAAGTTGCTGCCTCCCCCGAAAGAAGAGACCTCCAAAGACCAATTATTCACAACCAATCCCAAATGGATCCAAATTTGTTTAGTCAAGTCCAATCGCAAATCCCAAGACATGCATTACCTCAAACTGAAATCTCTCGAGTTCAGAATCCAATCCCCATTGGTCAACCTCGGGGAACGGCAATACCTCAAACACATCCTCAGGCACAAACTACCACCAGAACTCAAGAAGTTTCAGCTCAGCCAGTTGTTTCTCTTACCGAGGCGGCACTTCGCCAACACACTGCCCAGACTATTAACACATTCGCCAATCGAAACCAGCAAACTCAAGCAGCCCTGCAGAACCCTGGACCTCCTCAACCCGTCCCGCAGGTTAATAAAGCGGGAAAGAGGGCTCCTACTCCACCTCGGGTTCTGCGGCCAGCAGAGTTTCAAACACTTCCACGTGAGCGTACACAAAAAGTCCAGCCTGTGAGAGTCCAGCATCAACACAGAtctccaaacacacacagacaaacccATATTAGGCATATCAGCCCTCAACGGATGCCAGGGATGCATCACATGCATGGACACCCAATGCATATGCAACAGGTCCACAGAGGCAGACCCAGACGTTGAGGAAATGCAACGCTCGTCCATCTCCACGCTATTTGCACTGCAAAAAACTTTCCTAGCAAGCACAATGTCTCTCTGGTGGAAAGAAACAAATGCTCAGCCGTTCCTCAGACTCATTGTGCCATACGAATCTCTGCATTTtatcagagagagagagcggtacTGATTAAAAAGACTGATCTTTTACTTTGTTTATCCGTCACGTACGCATGCGAGAGCAGTGTGAATTTCATCCCTCAGAACAATGCAGCTCTGGGCTTTTTTCTAGCACTCAAACctctgaaaataaaacacaatgcagTGTTTTTCCACAGACAGGAAGACTTGAACGAAATCCAAATGAATTAGGAC

Function

symbol description
si:dkeyp-97a10.3 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane.

GO:

id name namespace
GO:0070593 dendrite self-avoidance biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098632 cell-cell adhesion mediator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-642 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000104656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021602 True 3331 mRNA 0.49 9 50926455 50952266

Neighbor

gene id symbol gene type direction distance location
XLOC_011075 CU855821.1 coding downstream 7547 50917913 ~ 50918908 (-)
XLOC_011074 si:ch73-90p23.1 coding downstream 28568 50889118 ~ 50897887 (-)
XLOC_011073 LO018246.1 coding downstream 287669 50638670 ~ 50638786 (-)
XLOC_011072 etfb coding downstream 697181 50214819 ~ 50229274 (-)
XLOC_011071 vsig10l coding downstream 723397 50183190 ~ 50203058 (-)
XLOC_011078 FP243388.1 coding upstream 8980 50961246 ~ 50961362 (-)
XLOC_011079 ago3a coding upstream 49691 51001957 ~ 51072406 (-)
XLOC_011080 NA coding upstream 126401 51078667 ~ 51080430 (-)
XLOC_011081 ago1 coding upstream 132206 51084472 ~ 51151993 (-)
XLOC_011082 serpinb14 coding upstream 292031 51244297 ~ 51254694 (-)
XLOC_010626 CR392024.2 misc downstream 30031280 20895112 ~ 20895175 (-)
XLOC_011068 CR855313.1 non-coding downstream 930861 49995478 ~ 49995594 (-)
XLOC_011064 NA non-coding downstream 1689354 49236408 ~ 49237101 (-)
XLOC_011063 NA non-coding downstream 1704362 49215478 ~ 49222093 (-)
XLOC_011062 NA non-coding downstream 1741971 49155860 ~ 49184484 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 803126 51755392 ~ 51755506 (-)
XLOC_011088 NA non-coding upstream 923105 51875371 ~ 51889734 (-)
XLOC_011089 NA non-coding upstream 945490 51897756 ~ 51947869 (-)

Expression


Co-expression Network