Fish Transcriptome and Expression Database

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model fish

XLOC_011077 (FP243388.2)

Basic Information

Item	Value
gene id	XLOC_011077
gene name	FP243388.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	50935190 ~ 50935306 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021603
ACCCACAGCCACATaactctgcagcccaagactggttactcactgaggCTAAGCAAGACTGAGCCTGGTCagtgcctggatgggagacctcGATAGAAAACTGGGTTGCTGTAGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115590

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021603	True	117	rRNA	0.53	1	50935190	50935306

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011075	CU855821.1	coding	downstream	16282	50917913 ~ 50918908 (-)
XLOC_011074	si:ch73-90p23.1	coding	downstream	37303	50889118 ~ 50897887 (-)
XLOC_011073	LO018246.1	coding	downstream	296404	50638670 ~ 50638786 (-)
XLOC_011072	etfb	coding	downstream	705916	50214819 ~ 50229274 (-)
XLOC_011071	vsig10l	coding	downstream	732132	50183190 ~ 50203058 (-)
XLOC_011078	FP243388.1	coding	upstream	25940	50961246 ~ 50961362 (-)
XLOC_011079	ago3a	coding	upstream	66651	51001957 ~ 51072406 (-)
XLOC_011080	NA	coding	upstream	143361	51078667 ~ 51080430 (-)
XLOC_011081	ago1	coding	upstream	149166	51084472 ~ 51151993 (-)
XLOC_011082	serpinb14	coding	upstream	308991	51244297 ~ 51254694 (-)
XLOC_010626	CR392024.2	misc	downstream	30040015	20895112 ~ 20895175 (-)
XLOC_011068	CR855313.1	non-coding	downstream	939596	49995478 ~ 49995594 (-)
XLOC_011064	NA	non-coding	downstream	1698089	49236408 ~ 49237101 (-)
XLOC_011063	NA	non-coding	downstream	1713097	49215478 ~ 49222093 (-)
XLOC_011062	NA	non-coding	downstream	1750706	49155860 ~ 49184484 (-)
XLOC_011087	CABZ01074290.1	non-coding	upstream	820086	51755392 ~ 51755506 (-)
XLOC_011088	NA	non-coding	upstream	940065	51875371 ~ 51889734 (-)
XLOC_011089	NA	non-coding	upstream	962450	51897756 ~ 51947869 (-)

Expression

Co-expression Network