XLOC_011079 (ago3a)


Basic Information

Item Value
gene id XLOC_011079
gene name ago3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51001957 ~ 51072406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021605
CAATCTGTCAACCGTACCCGAAATCCCGACCGGATAGTTTGAGTCACATACCGGGCAACCAAACATTATCTCCGGTGACACACGAGCCTCAGGGAAGGTGGACTAATACCGAGAGGAATCGCTTGCGGTGGGTTAACGCAACCGGTTTGTGCGGCCATAGGACAGTCAGAGTTTCTGAAGTTCATCAACTGCGAGCCGGGGACGGAACCGGACAGAGACCTCATGAATGGAAATCGGAACTACAGGAGCCGTTGGGGCCCAGTCCCTGTTCTCCATGCCACGGAGGCCCGGCTATGGCACCATGGGGAAACCTATCAAACTGCTGGCCAACTGCTTCCAGGTGGAGATCCCAAAGATGGACGTCTACCTGTACGAGGTGGACATCAAGCCCGAGAAGTGTCCACGGAGAGTAAATAGGGAGGTGGTGGACTCCATGGTGCAGCACTTTAAAGTCACCATCTTTGGGGATCGAAGGCCAGTTTATGATGGGAAGAAAAGTCTCTACACCGCCAACCCACTTCCTGTGGCACCTGCAGGGGTGGATCTGGATGTCACGCTGCCAGGTGAAGGGGGCAAAGACCGGCCCTTTAAAGTCTCAATTAAGTTTGTGTCTCTGGTGAGCTGGCACCTGCTGCACGAGGTGCTAACCGGGCGCAGTATGCCAGAGCCGCTGGAACTGGACAAGCCAATCAGCACCAACCCAGTGCACGCTGTGGATGTGGTGCTCCGCCATCTGCCCTCCATGAAGTACACACCCGTGGGCCGCTCATTTTTCTCCGCCCCGGAGGGTTATGATCATCCTCTAGGTGGAGGCAGAGAGGTGTGGTTCGGTTTCCATCAGTCTGTTCGGCCCGCCATGTGGAAAATGATGCTCAACATTGATGTGTCAGCCACGGCTTTCTACAAAGCACAGCCAGTCATTCAGTTCATGTGTGAAGTCCTGGACATCCACAACATCGACGAGCAGCCGCGACCCCTCACAGACTCCCACAGAGTCAAATTCACCAAAGAAATCAAAGGTCTGAAGGTGGAGGTGACCCACTGCGGGACCATGCGGAGGAAGTACCGCGTCTGCAATGTGACCCGCCGGCCTGCCAGCCACCAAACGTTCCCTTTGCAGTTGGAGAACGGCCAAACTGTAGAACGGACAGTAGCTCAGTATTTCAGAGAGAAGTACAACCTGCAGCTCAAGTACCCTCACCTGCCCTGTCTACAGGTGGGACAGGAGCAGAAACACACATACCTGCCTCTGGAGGTTTGCAATATTGTAGCAGGGCAGCGGTGCATCAAGAAACTGACAGATAATCAGACGTCCACCATGATCAAAGCCACGGCGCGCTCCGCACCAGACCGACAGGAGGAGATCAGCAGACTGgtgcgCAGCGCTAACTATGAAGCCGACCCGTTCGTGCAGGAGTTTCAGTTTAAGGTCCGGGATGAGATGGCCCACGTGACGGGGCGCGTGTTGCCCGCGCCCATGCTGCAGTACGGGGGCAGGGTGAGCACAGAGCACTTTATGAACCGCACTGTCGCCACACCGAGTCACGGCGTTTGGGACATGAGAGGAAAGCAGTTTCACACCGGCGTGGAGATCAAGATGTGGGCCATCGCCTGCTTCGCCACACAGAGGCAGTGCAGAGAGGAGATCCTCAAGGGTTTTACCGACCAGCTGCGCAAAATCTCGAAGGATGCTGGGATGCCGATTCAGGGTCAGCCGTGTTTCTGTAAGTACGCTCAGGGGGCCGACAGCGTGGAGCCCATGTTCAGACACCTGAAGAACACTTACTCTGGACTGCAGCTCATCATCGTCATCCTGCCTGGAAAAACCCCCGTCTACGCGGAAGTGAAGCGTGTTGGAGACACTCTTCTAGGAATGGCCACTCAGTGTGTGCAGGTGAAGAACGTGGTAAAAACCTCCCCGCAGACGCTCTCCAACCTCTGCCTGAAAATCAACGTCAAACTCGGCGGCATCAACAACATCCTCGTGCCGCATCAACGGCCATCAGTTTTCCAGCAGCCAGTCATCTTTCTGGGGGCGGACGTTACACATCCCCCTGCAGGAGATGGGAAGAAACCGTCCATCGCAGCGGTGGTGGGCAGTATGGACGCTCATCCCAGCAGGTATTGTGCCACTGTGCGCGTCCAGAGACCCCGTCAGGAGGTCATTCAGGATTTGTCCTCAATGGTGCGAGAGTTACTCATCCAGTTCTACAAATCCACTCGCTACAAGCCCACCAGAATCATCTTCTACAGGGACGGTGTTTCTGAGGGCCAGTTCAGACAGGTGTTGTATTATGAGCTGCTGGCCATTCGAGAGGCCTGTATCAGTCTGGAGAAGGAGTACCAGCCCGGCATCACGTATATAGTGGTGCAGAAACGCCACCACACACGCCTCTTCTGTGCCGACCGCAACGAGAGGGTGGGTCGCAGTGGAAACATTCCTGCTGGTACGACGGTGGATACAGATATCACACACCCTTATGAGTTTGACTTTTACCTCTGCAGTCATGCTGGAATACAGGGCACCAGCAGGCCCTCCCACTATCATGTCCTGTGGGACGACAACTGCTTCACTGCTGATGAGTTCCAGCTGCTCACCTACCAGCTGTGCCACACGTATGTGCGCTGCACCCGCTCCGTCTCCATCCCCGCGCCAGCCTACTACGCCCACCTGGTGGCCTTCCGCGCCCGATACCACTTGGTGGACAAAGAACACGACAGTGCCGAGGGAAGCCATGTCTCCGGACAGAGCAACGGCCGGGACCCCCAAGCGCTGGCCAAAGCTGTGCAGATTCACCACGACACCCTGAGGACCATGTACTTTGCCTAAGCCAGCTCACGTTCATCTAGTCATGCACACAAACccgacaaccacacacacacacacatgctgacaaacacacacacctcccagAATCCTGTGCGTCCTGAAGGGTCGATCTCTGTGGCGATTGAAGCACGGCCCACCCGACACTGTGCAGCAGGACGAGGAAGGCCTTTAAGGAAGCCGACCTGCTTTAAAACCACACATGGACCTCGGCGCTATTATGCAATATTAAACCAGCCAACTGAG

Function

symbol description
ago3a Predicted to enable miRNA binding activity. Predicted to be involved in miRNA mediated inhibition of translation. Predicted to act upstream of or within gene silencing by RNA; regulation of stem cell proliferation; and regulation of translation. Predicted to be located in P-body. Predicted to be part of RISC complex. Is expressed in fin; integument; nervous system; and pleuroperitoneal region. Orthologous to human AGO3 (argonaute RISC catalytic component 3).

GO:

id name namespace
GO:0072091 regulation of stem cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051107-16 Predicted to enable miRNA binding activity. Predicted to be involved in miRNA mediated inhibition of translation. Predicted to act upstream of or within gene silencing by RNA; regulation of stem cell proliferation; and regulation of translation. Predicted to be located in P-body. Predicted to be part of RISC complex. Is expressed in fin; integument; nervous system; and pleuroperitoneal region. Orthologous to human AGO3 (argonaute RISC catalytic component 3).

Ensembl:

ensembl_id ENSDARG00000059888

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021605 True 3073 mRNA 0.56 19 51001957 51072406

Neighbor

gene id symbol gene type direction distance location
XLOC_011078 FP243388.1 coding downstream 40595 50961246 ~ 50961362 (-)
XLOC_011076 si:dkeyp-97a10.3 coding downstream 49691 50926455 ~ 50952266 (-)
XLOC_011077 FP243388.2 coding downstream 66651 50935190 ~ 50935306 (-)
XLOC_011075 CU855821.1 coding downstream 83049 50917913 ~ 50918908 (-)
XLOC_011074 si:ch73-90p23.1 coding downstream 104070 50889118 ~ 50897887 (-)
XLOC_011080 NA coding upstream 6261 51078667 ~ 51080430 (-)
XLOC_011081 ago1 coding upstream 12066 51084472 ~ 51151993 (-)
XLOC_011082 serpinb14 coding upstream 171891 51244297 ~ 51254694 (-)
XLOC_011083 serpinb1l1 coding upstream 194096 51266502 ~ 51272006 (-)
XLOC_011084 zgc:173729 coding upstream 209553 51281959 ~ 51288178 (-)
XLOC_010626 CR392024.2 misc downstream 30106782 20895112 ~ 20895175 (-)
XLOC_011073 LO018246.1 non-coding downstream 363171 50638670 ~ 50638786 (-)
XLOC_011068 CR855313.1 non-coding downstream 1006363 49995478 ~ 49995594 (-)
XLOC_011064 NA non-coding downstream 1764856 49236408 ~ 49237101 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 682986 51755392 ~ 51755506 (-)
XLOC_011088 NA non-coding upstream 802965 51875371 ~ 51889734 (-)
XLOC_011089 NA non-coding upstream 825350 51897756 ~ 51947869 (-)
XLOC_011091 NA non-coding upstream 1454446 52526852 ~ 52540136 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 misc CM030133.1 CM030133.1 12067451 ~ 12140465 (+)