Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_011087 (CABZ01074290.1)

Basic Information

Item	Value
gene id	XLOC_011087
gene name	CABZ01074290.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	51755392 ~ 51755506 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021614
tgtcacagccatatcaccctgcagcctaagaccggttacttactgaagctaagcagggctgagcctggttagtacctggatgttaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000110732

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021614	True	115	rRNA	0.50	1	51755392	51755506

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_011086	si:ch211-107n13.1	coding	downstream	347867	51370106 ~ 51407525 (-)
XLOC_011085	serpinb1l4	coding	downstream	456331	51292624 ~ 51299061 (-)
XLOC_011084	zgc:173729	coding	downstream	467214	51281959 ~ 51288178 (-)
XLOC_011083	serpinb1l1	coding	downstream	483386	51266502 ~ 51272006 (-)
XLOC_011082	serpinb14	coding	downstream	500698	51244297 ~ 51254694 (-)
XLOC_011088	NA	coding	upstream	119865	51875371 ~ 51889734 (-)
XLOC_011089	NA	coding	upstream	142250	51897756 ~ 51947869 (-)
XLOC_011090	pdcl	coding	upstream	195004	51950510 ~ 51966846 (-)
XLOC_011091	NA	coding	upstream	771346	52526852 ~ 52540136 (-)
XLOC_011092	ubr5	coding	upstream	787044	52542550 ~ 52646789 (-)
XLOC_010626	CR392024.2	misc	downstream	30860217	20895112 ~ 20895175 (-)
XLOC_011080	NA	non-coding	downstream	674962	51078667 ~ 51080430 (-)
XLOC_011078	FP243388.1	non-coding	downstream	794030	50961246 ~ 50961362 (-)
XLOC_011077	FP243388.2	non-coding	downstream	820086	50935190 ~ 50935306 (-)
XLOC_011073	LO018246.1	non-coding	downstream	1116606	50638670 ~ 50638786 (-)
XLOC_011068	CR855313.1	non-coding	downstream	1759798	49995478 ~ 49995594 (-)
XLOC_011093	NA	non-coding	upstream	929252	52684758 ~ 52688445 (-)
XLOC_011100	NA	non-coding	upstream	1718952	53474458 ~ 53481394 (-)

Expression

Co-expression Network