XLOC_011089


Basic Information

Item Value
gene id XLOC_011089
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51897756 ~ 51947869 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021842
GTCGCCAAGCAGGACGCGCTCGGCCAAGATGGCGGACAAGTGTCAGCCGCGGTGTCCTGCACTTTTCTGAGAAACTAAACTCCAGCCGCGCTCGTGTTGAGTTTTGTTTGTATTCAGGCATCTCGACTGGAAGATAACGGGGAGACTGCCAGTTAGTATACACATTGTGGAGACCTGTGAGTGTACATAATGCAGCCCCCTCCTCGAACAACTCCTCCTGGAGCAAGTGGACCTCCACCTCCTTCTGGAGGCCCCAATTCATTCAGAAGAAACAGACCCCATAAACATGGGGCGGCGTCTGCTATGACACCGGCTGCCCCTTCCACAATGCCAGTGACTGATCCTTTTGCCTTTGGGAGACAAAATTTTTCATCTATGGCAGGGAGCAGCCAAGCTCCACCCACAAACAGCAACCCACTTCCTATGCAAAGTCCTCCCCTGCCAGGGTTCAACCCAACAGCTCCACCACAAGGGCCACCACCAGGACCCGCACAGGCAGCCTCACCTGGCCCACCACCAAGAATTTTTACACCACAGCCCGTTCCATCACGGCCTGGATCAAGCTCTATCCCTCCTCCTGCAGAAGCAGGATACTTCAGTTCCCAAGAACCAATCCCCTATATTGCACAATTGCCTAACCCTGCTCCTCCTTTAATTCCTAGTACATCACATCCTCCCTCCACTACCCCAACACCTCCAGTTCAGTCCCAGGCTCCTTTTCATTCCCAGCCAACCCCTCCCTTACCTTCACACTGGGTGCCTGAACATGGAAGCAGACCACCTTCTGTTCAAAACTACTTTCAGCCAACTAGTGATCTCCCATCTCAGCCTTTCCAAGCTCAAGCCCCACACCCTGGACCCTCTCCTCTTACAGCCCCACCTCCTGTACCTTCTCCCCTTACAGCCCCACCCCCTTTAACTTCTCCTCTCACAGCCCCACCTTTGACACAATCTCAAAATCAATTTCAGTCAGCTCAACCAAATGTTAGTGGCCCTGCTGCAACTTATCAACAGAACTCCCACTTCCCTGCTCATAACTATTTCAGTCAGTCAGGCGGACCCTCTGAGCCATGGTTCAATCAGAACCCACAGGATCCATCTCAGCGTGCCTACCATGTCCCCTACTCTGAAGTCCCTAGTGACTCAGGaactctgtcaatgttttttggGGGAAATGATGTTGAAAATGAAGAAACTCTAACAGGGGAGGGGCGTGTAAATGGAATTCATCAACCTCTCCATTCAACAACAGAATTCTCTGGTCCCTATTTGAATGACAGTGGTAACATACGAGCTGGGACAGGACCAAGTGATTCAGTGGAGAATCTGGAATGTGTTCCAAACCAGGAAGTTCTGCCTAGTGAGCCACCTCCAAGTCATGCCTTTGAGGGGGGACCTAACTTGGAGACACCAGACTCTGCTCCTCGCCTTGCCCGCTCTGCAAGTGTCTCATCCAGCTACAGTAATGTCAGTCACAGTAGTGGACACGGTGCTCACAGTGGGGGTCATGTCCCTCGTAGACAACAAGTAGTGGGAACATTTATCCAACAGGAGAGTCCTCGTCCACCTGATCACCCTCCACTGCATCCCTCAACTGGTGGATACTTTGAACAAATAGACTCTAACCCAGCTGCAGAGGCAAGTCCTACTTTCCCAACTCCTAGTCCACCTAAACCAGTTGGTGTGTTCCAGGCAAGTGCAAATTCCTCATTTGAGCCTGTTCGTTCACATGGTGTAGGAGTTCGACCTGCTGAAGTTGATCGTGCACGTGTGGTCATGGAAAAGGGTGGACGTGACATGCAGCCTGGCAATTTAGAGCATCCTCCAGATAACTTGGAGACTATTTACTTATCAGAACGCCGACCCTCATCTCGAGCTCAGGGGGCACGACGCCCCATCGAAAGTCCTGCAACTGCACTCTGGGCTCAAAATGACACTGCCAGTCTAAGTGCTAACATACTGTTAGCCCCTGCAGCACCGTCTCTGACTGCAACATTTGTTCCAGCACATCCATCTGAAGTAATTCAGCCACCAGAAGATGGGCCACTTGATCTGCATCCAGCTAGGCCAGATCCACAACCTCCCTCTGAAAACCTTGAGATTCCTCCAGACTCTACACCTCAGGCAAGTCTGGGATATGCCTCCTTGCTTGTGACCTCACCTCCAGAAGAGGCTCTGAACCAGCCCGTCTTGATTGCGCCACCTTCCTCTAATTACAGTTTGATTTCATCCCAAAATCTCTTACAACCATCAATTCTGCCAAGTCCTCAAGAGACAGCAGCACCTGTTCACCCACATCCTCAATCTtcattgaccaatcaaatgcctCAGAATTCTCCTCCAACAAATCAGCCACCACTTCTTTTTTCTCAGACACCAGTAAACTTCAGTTCTTCCTCAGCTCAAGGTGTCTTGAATCTAACGCGAGAGGCCAACGATGGTCAGGCAGCCCGACCAAACCTCTCAAGGGCCCAGTCTCTTAAAGGTGATAGCCAATTTCTTCCGCCTTCTGCTACTCAAGCTCCGCCTTCTTCAGCTGCCTCCACCAATCACAACCAACCTTCAAATTATCAGCTGCTTGATTTTTCTATGCATCAGCCACAGTCTACAAATCAGGTCACATCAGTCCCAGCTGTCTCTCAATCAACCCATCCTGCAGGCTTGGTGAATAACACACCTGGCTTTTACCTGCAGGTCACCAAAGATGCACAGCAAGGGGGACAGTCTGACACTGATTCTCTGTCCCATCAGCAGAACTCCAACCCCCCATTACCCTCTAGCAACCAACTTGACAATAATCAGACTCTGAACTCCCATCCTCCTCCACCTCCAGCTCAAAACCAGCCTCCTCCACAGGCCCCTCCAACACATCCTGGCGCCCCTCCTACTGGACCTGGATCTGCCCAACCACCTCCTTACCCACCCCAATCTGGAAACTCTACCACCCAACCACCTCAAGAACCTCAAAGGCCTCCTTCATCTCTAGGTAGTCAATCAGGTTATGGGGTTCCTCCTGCCATGCCCCCTGGTCCAGGTTACCCAGGGTACTACCCAGGAGCCTACCCGGAGTACCAGGATGGAAGAGTACCATACCCACCGCAGTATCCTGTGGATCCCAGAACTCAAAATTATTATCAGgaTGATCCCTACCGTAGAGGCGATCCTCGATACGGATGGTATGATGGACAGAATCCTGGCTATCGGGAGGCTGAACGCCAACCAGAGAGGCCAAGCTCTAGAACCAGTCAATACTCTGACAGGCCCAGCTCAAGACAGGGGTATCAAGAAGACTTTTCAAGATCCAGCCGTAGTGCCTATGACGAATACTATGCAAACTACTATAAGAGACAATACGATGCCTATGGAGaTAGGAGCAGGTGGTATGATCCCAATGCTGCTTATGATCCACGCTACAAAGCATACTATGATCAAATGTATGGATGGTATTATAACCAAGATGGTTACAGAGGAGGACAGGCGTATTACAACCAACAATATCAAAACAGGGGAAGGGAAGGGTATGACGATCCATGGCGATATTACCCTGGTTATGACTCCAGCTTTGACGATGACTCTCGGAGACGTGACCCATATGCTGATGATTTTGACCGGCGTTCGGTTCACAGTGAACAATCAGCACACAGTGTGCATTCATCACACAGTCGACGTAGTAGCTTCAGCTCACGGTCACAacagAGTCAGGTTTACAGGAGTCAACCAGACTTGGTCAGCGCAGCCTACGATGCCACTGGCACCACTCTTCCAGCAGATTACACCTACAGCCAGTATCCTAACCCTTCAGATACTGTGAATTATGGTCAGGATCCTTATAATTCTGCTGACAACACCTGGTCTGCACCAGAACAGCCTCCTCCAAGACCGTTGACCCCGGAGAAGTTTTCTATTCCTCATCGTTGTGCTCGTTTTGGTCCAGCTGGTCAGCTGATCCTTGTCCAACCCAACCTGCCCTCTGCTGGTCAGCCCACACTAGTAGAAATCCACAGTATGGAGACGCTCCTGCAGGATTCTCCAGAGCAGTCAGACATGCGTTCATTCCCAGGCCCGCTGGTCAAaGAGGAGACTCATAAGGTGGATGTCATGAAGTTTGCTCAGAACAAAGCCCAAGAGTGTTTGCGAAACGATGACCTCATCGACAAAGACTCCGCCTACCTCATCTGGGAGTTCATTGTGCTGCTGTGTCGCCAGAATGGGACCGTAGTGGGTACAGATATTGCTGACCTGCTGCTGAAGGAGCATCGCTCTGTGTGGTTGCCAGGAAAATCACCCAATGAGGCCAATCTCATTGACTTTAACAATGAGGCAATAGAGCATGCAGAAGAAGACATGGGGCAAATGTCCCTCCTATCAGACACGTTCATGGGTGTGCCTGAAAATATTGGCAAGGATACGGAGCGCTTCAGAGAACTACTGCTGTTTGGCCGCAAGAAGGACGCTCTGGAGTCTGCTATGAAGAATGGTCTGTGGGGTCACGCTCTGTTACTGGCCAGTAAAATGGACAACAGAACTCACGCTCGCGTCATGACCAGGTTTGCCAACAGCCTGCCTATTAATGACCCTCTTCAGACAGTTTATCAGCTCATGTCAGGACGTATGCCGGCTGCTGCTACTTGTTGTGGAGATGAGAAATGGGGGGATTGGAGGCCACATTTAGCCATGGTGCTGTCCAACCTCACTCACACTCTGGATCTTGACACCCGCACTATTTCAACAATGGGTGACACTTTAGCATCTAAAGGTCTTGTAGACGCAGCCCATTTCTGTTACCTGATGGCTCAGGTGGGTTTCGGTGTTTATACCAAGAAAAGCACCAAGATGGTCCTCATCAGCTCCAATCACAGCTTGCCTTTTTTGAAGTTCTGCTCATCAGAGGCAATTCAGCGGACAGAATCATACGAATACGCTCAGTCTCTTGGCTCTCAGCCTCTTTCTCTGCCTAACTTCCAGGTGTTCAAGTTCATCTACGCATGTCGTCTGGCGGAGTCTGGTCTCTGCGCTCAAGCTTTTCATTACTGTGAGGTCATTTCCCGCACACTGTTGAGTCTGCCGGAGTATTACTCTCCTGTGTTCATCAGTCAGCTCATACAGATGTCTCTGAGGTTAAGGTTTTTTGACCCTCAGCTGAAGGAACGGCCGGAGCAGGAGTTGTTTATAGAGCCTGATTGGTTACTTCATCTCAGACAACTCGATGGACAGATCAAGGAGGGTGTGATCTCTTTGCGTACGGACCGCAGCACCCCACAGCTTTACCCCTGCAGTACACCCAGTTCAGAAGACCAGTGCAGCCCGCCTGAACCCCCAGCTCTGACCCCAGACCCCCACAACGCTCTCATGACCTCTCTTGTGCCCCCAGCTGCTGTACAACTCATGCCTCCAGCCCCTCCCACTATTCTTCAGGATGGGGCGGTTTCTCTTCAGCAAGTTCCGCCTCCAAGTGAAAGTGTTCCGTTCTACCCAGTGGCTCCAGGGCCGCCGCAGCCAAACTTTGTGGCTCCGTACCAACCTGAAATGCAAGAGCAGTACATGCCAATGCCACCCCAAATACCCCAACATATGCCCCCGCAAATGCCGACATACAACCCTGCAGAAATGCCTCCACAGATGCCACAAGGAATGCCTGGTCAGATGCCTCCACCGATGCACGGAGCCGAACGGGGCTCAGCTCCTTCCTCCCCTCAGCAGTTCCCCCAGCCGTCTCCAACGTTCGCTAACCCTCCTCCACCGGGGAAGGACTTCTATGATGAAATGGCACGTTTGggCCCAGGCAGAAGATCAAGAACAACTTCACAGTCATCAATGCATATGGCACCGGGTCGTCGATCTCGGACAACATCTGAATCGTCCAATCATTCTGGCCGGGAACGCAGCAGCTCATTTGCCAATCAGGGATCTCCACCCCCTCCACCAATCCCAGAGGCTCCACCACAGGATGTGCCAGAGAGAACCAAGAAAGACTCTCCTAAAAAACAGGGATCTGGTGGCGGCTTGCTGACCTGGCTGTTTCCAAAGCGGAAGAATGAAGCACATCTTCCAGACGACAAAAACAAATCTattgtgTGGGATGAAAAGAAGCAGAAATGGGTGAATCTGGATGAGCCAGAGGAAGAGagtaaACCTCCTCCTCCCCCACCCACCGGCTTCCCCAAAGCTCCAATGAGCGCTCCAGCTATGGTACCTCCAGGAGTGGCCGGCCCACCATCAGGGCCTCCTGTGAACATGTTCTCCAGAAGAGCAGgcacGAGGAGTCGTTATGTGGATGTGCTGAATCCTGGTCGTGGAGGAGCTAAAGCAGTggcttcagtgcctcctcctgcTGATCTGTTCGCTCCTCTCGCACCCATGGCCATGCCAGCCAACCTCTTCACAccagctgcagCCCCAGATGAGCAGCAGCCGATGGAGGGAAGTGTTCCAGACACCAGTGGAGAAAACACACTGCAGACAAGTGCCACAGTgccacagATGTTTAATCCGAATGCTGCTTTGCCTCCCGGCCCGGAGGGAACCCAGTCTGGAGAGCTGTCACGTTCTAGCTCAATGAGTTCTCTATCGCGAGAAGTGAGTCAGCATTTAAATCAGGCTCCTGCTCAACAACCAGTGCAAGGAGCTCCGCCTGCAGGGGGTGTGACCTTTTATAACCCCTCCCAGTTTGCACAGTCTGTTCCCACAAACCGTACTCGCCCTGGGCGCCTGGGACAGAGAGGATACCCAACACCGAAGTAACAGTACCGCTGTAGTTCTAGATCAGACTGTGGTTCTAGATCATGAAGTTCGGACTCCTGGAAGCGCTGGCATGTGGCCATCCAAACCCTTCAAATAACACTGTCATAATCGATGTTTGCAATTGGACGAGACTCTGTTTCTCCATACGGCCTGTGTGTTGTGTGTACGGACCGGGCGGCGCTTCCTCAACATGAGCAGTGTGAATTAAAAGTGCAATATTGCGATTTTTAGCCCTGTGTAGATTGATTTCGCTAGTGTAGTCTGCTCATTTCAGCAGGATGTCTGCAAGTGTGTATGAGCGCATGTGCGTTTGGAGGAAACGTGGCCGTGTCCTGCTAACGGAAAGCATGAGTTTGAGGGCGGACAGGCCTGTTATCATGGGAACAGTGCAGCGTACCAGAATGTTTTAGATATTTATTAAGCTTCCTGTCAGAATGAAGCGGCCCGTCATGAGTACGAGTTTAGTGTCTTTTTACCATCTCCTGGTCAAATCCTGTAATTTCGCCAGTAGCTACAGAATCATACGTTTCTATGATTTACCAAAATCCTGTGATCATTTGTGTGTATTGCtcataaaatatcattattattttccctGGCTTCTCATCGCGCACTCTGATTGGTCGTCGTGTCTCTTAATCACACGCCGTTATTTCCTTTGCTTTTTGCCATGCTGGACAGCGGAGGTTTTTTGTAATTCCAAAGGTCAGCTCTGTTTGAAGGAAGCTTGGACTTTTCCAATGTGTTTAGAAATTGACTGTACAATTCTTGATAAAAGTGATAATAAAGATATTTTTGAGCTCTTTAAGGCTTTGGAAAgtgt
>TCONS_00021617
CGCTCGTGTTGAGTTTTGTTTGTATTCAGGCATCTCGACTGGAAGATAACGGGGAGACTGCCAGTTAGTATACACATTGTGGAGACCTGTGAGTGTACATAATGCAGCCCCCTCCTCGAACAACTCCTCCTGGAGCAAGTGGACCTCCACCTCCTTCTGGAGGCCCCAATTCATTCAGAAGAAACAGACCCCATAAACATGGGGCGGCGTCTGCTATGACACCGGCTGCCCCTTCCACAATGCCAGTGACTGATCCTTTTGCCTTTGGGAGACAAAATTTTTCATCTATGGCAGGGAGCAGCCAAGCTCCACCCACAAACAGCAACCCACTTCCTATGCAAAGTCCTCCCCTGCCAGGGTTCAACCCAACAGCTCCACCACAAGGGCCACCACCAGGACCCGCACAGGCAGCCTCACCTGGCCCACCACCAAGAATTTTTACACCACAGCCCGTTCCATCACGGCCTGGATCAAGCTCTATCCCTCCTCCTGCAGAAGCAGGATACTTCAGTTCCCAAGAACCAATCCCCTATATTGCACAATTGCCTAACCCTGCTCCTCCTTTAATTCCTAGTACATCACATCCTCCCTCCACTACCCCAACACCTCCAGTTCAGTCCCAGGCTCCTTTTCATTCCCAGCCAACCCCTCCCTTACCTTCACACTGGGTGCCTGAACA

Function

GO:

id name namespace
GO:0061028 establishment of endothelial barrier biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0004534 5'-3' exoribonuclease activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000063300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021842 False 7564 lncRNA 0.51 31 51897756 51947869
TCONS_00021617 True 679 processed_transcript 0.53 2 51941830 51947781

Neighbor

gene id symbol gene type direction distance location
XLOC_011088 NA coding downstream 8022 51875371 ~ 51889734 (-)
XLOC_011087 CABZ01074290.1 coding downstream 142250 51755392 ~ 51755506 (-)
XLOC_011086 si:ch211-107n13.1 coding downstream 490231 51370106 ~ 51407525 (-)
XLOC_011085 serpinb1l4 coding downstream 598695 51292624 ~ 51299061 (-)
XLOC_011084 zgc:173729 coding downstream 609578 51281959 ~ 51288178 (-)
XLOC_011090 pdcl coding upstream 2641 51950510 ~ 51966846 (-)
XLOC_011091 NA coding upstream 578983 52526852 ~ 52540136 (-)
XLOC_011092 ubr5 coding upstream 594681 52542550 ~ 52646789 (-)
XLOC_011093 NA coding upstream 736889 52684758 ~ 52688445 (-)
XLOC_011094 azin1a coding upstream 758190 52706059 ~ 52736549 (-)
XLOC_010626 CR392024.2 misc downstream 31002581 20895112 ~ 20895175 (-)
XLOC_011080 NA non-coding downstream 817326 51078667 ~ 51080430 (-)
XLOC_011078 FP243388.1 non-coding downstream 936394 50961246 ~ 50961362 (-)
XLOC_011077 FP243388.2 non-coding downstream 962450 50935190 ~ 50935306 (-)
XLOC_011100 NA non-coding upstream 1526589 53474458 ~ 53481394 (-)
XLOC_011101 CR759845.1 non-coding upstream 1637838 53585707 ~ 53637122 (-)
XLOC_011102 NA non-coding upstream 1692377 53640246 ~ 53649995 (-)

Expression


Co-expression Network