XLOC_011092 (ubr5)


Basic Information

Item Value
gene id XLOC_011092
gene name ubr5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 52542550 ~ 52646789 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021620
ATGACGTCCATTCACTTCGTGGTTCACCCGTTACCCGGGACCGAAGACCAGCTTAATGACAGACTCCGAGAAGTGTCGGAAAAGCTCAACAAATACAACTGTAATAGTCATCCACACCTTATTCCATTGGAGCAGGCCAAACTTAAGCAGTGTGTGGTTGGACCAAATCATGCTGGATTTCTCCTTGAGGATGGACGCATCTGCAGGATAAGCTTTGCCGTTCAGCCTGACCGTCTGGAGCTTGGCAAGCCGGATGGCAATGATGGTTCAAAGTTGAGCAGTGTCTCAGGGGCAGGAAGGAGCTCCAGGCCAGGCAGGACTAGTGATCCGCCCTGGTTCCTGTCTGGTTCTGACACACTGGGCAGACTGGCAGGCAACACCCTTGGGACCCGCTGGAGTTCAGGAGTAAATGGCGGAGGAGGAGGATCTTCAGGACGTTCATCCACAGCAGCCCGTGATTCACGCAGGCAGACCCGCGTCATCCGCACCGGCAGAGATCGAGGCTCTGGCCTGCTGGGAAGCCAACCACAGCCTGTGATTCCAGCCTCCGTCATCCCCGAGGAGCTCATCTCTCAGGCTCAGGTGGTTCTTCAGGGGAAATCCAGAAGTGTCATCATTCGAGAGCTGCAGCGCACAAACCTTGACGTGAACTTGGCTGTAAACAACCTGCTGAGCAGAGATGATGAGGATGGAGATGATGGCGATGACACGGCCAGCGAATCCTACTTACCTGGAGAAGACTTGATGTCGCTGCTAGATGCAGACATTCACTCCGCTCACCCCAGCGTGATCATAGATGCCGATGCCATGTTCTCTGAGGACATCAGCTACTTCGGTTACCCCTCTTTTCGTCGCTCCTCCTTGTCTCGTCTTGGCTCCTCACGAGTTCTCCTTCTCCCCCTAGAGAGAGACTCTGAGCTGCTCCGCGAGCGTGAGTCGGTCCTGAGGCTGCGGGAGAGGCGGTGGCTGGACGGGGCCTCCTTCGATGCGGAGCGTGGCTCCACCAGCCGCGAGGGAGAGCCCAGCCTTGACAAGAAGAGTGTCCCGCTGCAGAGCCCAGTCACTCTGGGGGAAGAGCTCCAGTGGTGGCCTGATAAGGACTATGTAACAAAGTTTGTCAGCATTGGTGCTTTGTACTCGGAGCTGGTTGCCGTCAGTACCAAAGGAGAACTCTACCAGTGGAAGTGGAATGAACCTGAACCTTACAGAAACGCACAAAATCCTTCTATACATCACCCTCGTGTTCCTTTCCTGGGCTTGACCAATGAAAAGATCACCCACCTGTCCGCCAACAGTATCCGAGCCACTGTGGCCACCGAGAACAACAAGGTGGCAACATGGGTGGATGAAACTCTGAGCACTGTTGCTGCTAAACTCGAACACGGAGCACAAACGTTCCCGGAGCTGCAGGGGGAGCGGATCGTCTCTCTGCACTGCTGTGCCCTGTATACCTGCGCTCAGCTGGAGAACAGCCTTTACTGGTGGGGTGTTGTGCCTTTTAGTCAACGGAAAAAAATGCTTGAAAAGGCCAGAGCCAAGAACAAGAAACCAAAGTCCAGTGCTGGAATCTCTTCGATACCCAACATCACAGTAGGAACTCAGGTGTGCCTGAGGAATAATCCTCTTTATCACGCTGGTGCCGTGGCCTTTTCCGTGAACGCCGGGATCCCTAAAGTGGGCGTCCTGCTGGAGTCGGTGTGGAACATGAACGACAGCTGCCGCTTCCAGCTGCGCTCGCCAGAGAGCCTGAAAAACATGGAGAAAAACACCAAGACACAGGAGACCAAGACGGAGAGCAAGCCAGAGCTGGTGAAGACGGAAATGGGCCCTCCGCCCTCACCAGCGTCCACATGCAGTGACACTTCATCCATCGCTAGCAGCGCTTCACTGCCGTACAAGCGAAGGCGCTCAACACCGGCTccgaaggaggaggagaaggtgaATGAGGAGCAGTGGCCTCTGCGAGAGGTTGTTTTCGTGGAGGATGTTAAAAACGTCCCCGTGGGAAAGGTGCTAAAAGTCGATGGTGCATATGTTGCTGTGAAATTTCCAGGGACGTCGAGCAGCGTGAGCAGCCAGAGCGCAGCTCCCACTGACTCTGACCCGTCCTCACTGCTGCAAGACTGTCGACTGCTCAGAATAGATGAGCTACAGgTTGTTAAAACTGGTGGAACACCAAAAGTTCCTGACTGTTTTCAGCGAACACCTAAAAAACTTTGCATCCCAGAAAAAGCTGAAATTTTAGCAGTGAATGTTGACTCCAAAGGAGTTCATGCTGTGTTGAAAACGGGCAGCTGGGTGAGATACTGTGTCTTTGACTTAGCCACCGGCAAAGCCGAGCAAGAGAATCACTTTCCCACCAGTAACCTGGCGTTTCTTGGTCAGAGCGAGCGAAATGTGGCCATCTTCACTGCTGGCCAGGAGAGTCCCATTATTTTGAGGGATGGCAATGGCACTATTTATCCCATGGCTAAAGACTGTATGGGTGGAATACGTGACCCTGATTGGCTGGATCTGCCGCCTATAGCCAGTCTGGGCATGGGAGTTCACTCGCTCGCCAACCTTCCCAGTAACTCCACAATCAAAAAGAAGGCGGCCATCATCATAATGGCTGTAGAGAAGCAGACTCTGATGCAGCACGTGCTGCGCTGTGATTACGAGGCGTGTAGGCAGTATCTGATCAGTCTGGAGCAGGCCATGCTACTGGAGCAGAACCCTCACGCTCTGGACACTCTGCTAGGACACCGCTGTGACGGAAACCGCAACGTCCTCCATGCCTGTGTGTCCGTCTGCTTCCCCGTCAGCAACAAGGAAACCAAGGAGGAAGAAGAAGCAGAGCGGTCTGAAAGAAACACGTTCGCTGAGAGGCTTTCTGCAGTGGAGGCCATTGCCAATGCCATATCAGTGGTGTCGAGCAACAGCTCCGGGAACCGGACAGGATCATCCAGCAGCAGGGGCTTGCGTTTGAGAGAGATGATGCGGCGCTCACTCCGTGCTGCAGGTTTAGGCCGACATGAATCCGGACCTTCCTCCAGCGACCATCAAGACCCCGTTTCACCCCCGATAGCACCTCCTAGCTGGGTACCAGACCCTCCACCGATGGATCCTGACGGTGACATTGATTTCATCTTGGCCCCTGCAGTGGGCTCCCTCACCACTGCTTCCACAGGCACCAGCCAGGGACCCAGCACTTCCACCATCCCAGGACCCTCCTCTGAACCATCAGTAGTGGAATCTAAAGACCGTAAGGCGAACGCACACCTGATACTGAAGCTGATGTGTGACAGCATCGTCCTGCGGCCTCATCTAAGAGAACTGCTCTCTGCCAAggATGCTCGTGGAATGACTCCATTCATGTTAGCAGTGAGTGGCAGAGCTTACCCAGCAGCCATTACTGTCTTAGAAGCAGCACAGAAAATTGCCAAAGGTGAACCAGGTCTTGGAGAGAAAGAGGATACAGCATCTGTGTTCATGGAGATGATCTGTCCTTCAGGAACCAATCCAGACGACTCTCCGCTGTACGTCCTGTGCTGTAACGACACCTGCAGCTTCACCTGGACTGGAGCAGAACACATCAACCAGGACATCTTTGAGTGCAGAACTTGTGGCCTGCTGGAGTCGCTGTGCTGCTGCACTGAATGTGCTAGAGTCTGTCACAAGGGGCACGACTGCAAACTGAAGAGGACGTCACCAACAGCTTACTGTGACTGCTGGGAGAAGTGCAAATGCAAGACTCTCATCGCAGGCCAGAAAGCGGCACGTCTGGATCTGCTCTACAGGCTGCTGACCACCACTAATCTAGTGACCACTCCTAACAGCAGGGGAGAGCACATCTTGCTGTTTCTGGTGCAGACTGTTGCAAGGCAGAGTGTCGAACACTGTCAGTATCGACCTCCTCGCATTCGAGAGGACAGGAACCGGAAAGCTGCCAGTGCTGAAGACTCTGATATGCCAGATCATGACCTGGAACCTCCACGCTTTGCTCAGCTGGCTCTGGAGCGAGTGTTGCAGGACTGGAACGCACTGAAGTCAATGATAATGTTCGGCTCTCAGGAAAATAAAGATCCGTTAAGCGCTAGCAGCAGAATCGCTCACCTTTTACCGGAGGAGCAGATGTACCTCAACCAGCAGAGTGGCACCATCAGACTGGACTGTTTCACACACTGCCTTATTGTCAAGTGTGCACCAGACATCACTTTCATTGACACACTGTTAGGGACCCTGGTGAAGGAGCTGCAGAATAAATACACCCCCGGCCGGCGGGAAGAGGCCATCAATGTCACACGGAGGTTCTTGCGCTCTGTGGCCAGAGTGTTTGTCATCCTCAGCGTGGAGATGGCATCTTCCAAGAAAAAGAACAACTTCATCCCTCAGCCTATTGGGAAGTGCAGGCGTGTGTTCCAGGCACTGTTGCCGTACGCAGTGGAGGAGCTCTGCAATGTGGCCGAGTCTCTGATCGTGCCGGTGCGTATGGGCATCGCTCGGCCCACAGCTCCCTTCACTCTGGCCAGTACCAGCATTGATGCAGTGCAGGGCAGTGAGGAGCTCTTCTCTGTGGAGCCTCTGCCACCTCGACCCTCCCCGGACCAGTCCAGCAGctCCAGTCAGTCTGCCTCTTCATACATCATCAGGAACCCGCAGCCCCGCCGCAGCAGCCAGTCTCAGACAGCCCGCGGACGGGACGAGGAGCAGGATGATATCGTGTCTGCTGACGTAGAAGAGGTGGAGGTGGTGGAGGGTGTTGCAGGTGAGGAGGATCACCATGATGACCAGGAGGAGCAGGGAGAGGAGAACGCAGAGGCTGAAGGACAGCATGATGAGCACGATGAGGATGGGAGCGACATGGAGCTGGATTTATTGGCTGCCGCTGAGACCGAGAGTGACAGTGAGAGTAACCATAGCAACCAGGACAATGCGAGTGGCCGCAGGAGTGTTGTGACGGCAGCCACTGCTGGATCTGAAGCAGGTGCCAGCAGTGTTCCTGCTTTCTTCTCCGAGGACGACTCCCAGTCGAATGACTCCAGCGACTCGGACAGCAGCAGCAGCCAGAGTGACGATGTGGATCAGGAGACGTTTCTGCTGGACGAGCCTCTTGAGAGAACCACCGGCTCAGCACATGCTAACAGTGCAGCCCAGGCCCCACGCTCCATGCAGTGGGCTGTTCGCACTACACCCAGCCAGCGCTCTGGAGGTGGCGCCCCATCCAGCTCGTCCGCTCCTGCTGCGAGCTCCACTGGCCTCATCTACATCGACCCGTCAAACCTGCGCCGCAGCAGCGCCATCAGCACCAGCGCAGCCGCTGCCGCAGCAGCCCTGGAGGCCAGTAACTCCAGCAGTTATCTGACGTCTGCCAGCAGCCTGGCTCGAGCATACAGCATCGTCATCCGCCAGATCTCTGACCTCATGAGTCTCATTCCCAAATACAACCACCTGGTCTACTCGCAGTACCCCGCTGCTGTCAAACTCACCTATCAGGATGCTGTCAATCTGCAGAACTTTGTGGAGGACAAGTTGATTCCCACCTGGAACTGGATGGTGTCCATCATGGACTCCACTGAAGCGCAGCTGCGTTACGGCTCGGCTCTGTCTTCAGCCGGGGATCCTGGTCATCCCAGCCACCCGCTACACGCATCCCAGCATGCCGGCCGCAGAGAGCGCATGACCGCTCGAGAGGAGGCCAGTCTGCGCACTCTAGAAGGACGAAGGCGTGCTGCTACGCTTCTGACGGCACGTCAGGGCATGATGTCAGCGCGAGGAGATTTCCTGAACTACGCTCTGTCTCTGATGCGTTCCCATAATGACGAGCATTCAGACGTTCTGCCTGTGTTAGATGTCTGTTCGCTCAAACACGTGGCTTACGTCTTCCAGGCGCTCATCTACTGGATTAAAGCCATGAATCTGCAGACCACGCTCGACACCACTCAGATTGACAGGAAGAGGAATCGTGAGCTGCTGGAGCTCGGTCTGGACAATGAAGACTCTGAGCACGAGAACGATGAGGACACCAATCAGAGCTCTACACTGCAGGATAAGGACGAGGAGCCTGTGCCTGCAGAGACTGGACAACACCATCCGTTTTTCCGCCGCTCGGACTCCATGACCTTCCTGGGGTGCATCCCTCCAAACCCTTTTGAAGTTCCTCTAGCAGAGGCCATTCCTCTGGCTGACCAGCCGCATCTCCTGCAGCCCAATGCCAGAAAGGAGGATTTGTTTGGACGGCCTAGTCAAGGTCTATATTCGTCCTCATATATGGCCAGTAAAGGCCTCACCGATCTGACTGTGGACATGAATTGCTTGCAGATTCTACCCACAAAGATGTCGTATTCGGCGAACATGAAGAACGTGATGAGTATGGAGTCCCGGCAGAGGGGTGGCGAGGAGCAGCCGGTGGCGGAGCAGGAGATGGATGTGTCTAAACCCGGCCCTTCACCACACGATCTGGCGGCCCAGTTAAAGAGCAGCCTGCTGGCAGAGATTGGCCTGACTGAGAGTGATGGCCCACCGCTGCCCACGTTTATTCCACACTGTAGTTTTATGGGGATGGTGATCTCTCATGACATGCTGCTGGGCCGCTGGCGGCTTTCTCTGGAGCTGTTTGGCCGTGTTTTCATGGAGGACGTTGGAGCAGAACCAGGATCTATCCTGACAGAGCTGGGGGGTTTTGAGGTAAAGGAGTCCAAGTTTCGTCGTGAGATGGAGAAGCTGCGTAACCTTCAGTCGCGTGATCTGGCCCTGGAGGTGGACCGAGACCGTGAGCAGCTCATCCAGCAGACCATGCGGCAGCTGAACGCTCACTTCGGCCGCCGCTGTACCACCACACCCATGGCCGTGCACCGCGTAAAGGTGACATTCAAGGATGAGCCTGGAGAGGGCAGTGGTGTCGCTCGCAGCTTCTACACCGCCATCGCTCAGGCCTTCTTGTCCAACGACAAGCTGCCCAATCTGGACTGCGTGCAGAGCGTCAGCAAGGGGATGCAGGCTAGCAATCTTATGCAGCGGCTGAGGAACCGAGATCGTGAGCGTGAGAGGAGGAGCGGAGGACTGAGAGCTGCATCCAGACGAGATCGTGACAGGGACTCGCGGAGGCAGTTGTCCATCGACACCCGGCCGTTCAGACCTGCATCAGAAGGAAACCCCAGTGATGAACCAGAACCGCTGCCGGCTCACAGACAGGCTCTGGGAGAGAGACTTTACCCACGAGTTCATGCCATGCAACCGGCGTTTGCTAGTAAAATCACAGGGATGCTGCTGGAACTGTCTCCCGCTCAGCTGCTGCTACTCCTGGCCAGCGAAGACTCGCTCAGAGCCCGAGTGGAGGAGGCCATGGAGCTGCTCATAACTCATGGACGGGAAAATGGTGCTGACAGTATACTAGACCTCGGCCTCCTCGACACTCCTGAGAAAGCACAACAGGAGAACCGAAAGAGGCATGGTTCGACTCGCAGTGTGGTGGACATGGAGCTGGATGACCCTGATGATGGGGATGATAACGCTCCTCTGTTTTACCAGCCTGGAAAGAGGGGTTTCTACTCACCACGTCCCGGCAAGAACACTGAGGCCAGGCTCAACTGTTTCCGTAACATCGGCAGGATACTGGGTTTGTGTCTGCTACAGAATGAGCTTTGCCCAATCACTCTCAACAGACACGTCATCAAGGTGCTGCTCGGCAGAAAGGTGAACTGGCACGACTTTGCGTTCTTCGACCCGGTAATGTACGAGAGTTTGCGGCAGCTCATCCGTCACTCTCAGACTGAAGAGGCGGAGGCTGTGTTTGCGGCGATGGACCTGGCCTTCGCTATCGACCTCTGCAAGGAGGAGGGAGCAGGACAGGTGGAGCTGCTGTCCGGTGGAGTCAACATGCCGGTGACGCCTCTGAATGTGTACGAGTACGTGAGGAGATACGCAGAGCACCGGATGCTGGTGGTGGCAGAACAGCCTCTGCATGCCATGCGGAAAGGTCTTCTGGATGTGCTTCCTAAGAACGCTCTGGAAGATCTGACAGCGGAGGATTTCAGACTGCTGGTCAACGGCTGTGGAGAAGTCAACGTCCAGATGCTCATTAGTTTCACTTCATTCAATGATGAGTCAGGTGAGAATGCAGAGAAGCTGCTGCAGTTCAAGCGCTGGTTTTGGTCCATCGTTGAGAAGATGAGCATGACGGAAAGGCAGGACCTGGTGTACTTCTGGACGTCCAGCCCGTCTCTGCCGGCCAGTGAAGAAGGTTTCCAGCCGATGCCCTCCATCACCATCCGCCCGCCGGACGACCAGCACCTGCCCACAGCCAACACCTGCATCTCTCGCCTCTACGTGCCACTTTACTCTTCCAAACAGATCCTCAAACAGAAACTTTTACTAGCCATCAAGACCAAGAACTTCGGTTTTGTGTAG
>TCONS_00021846
TGGAGTTGAGAGTTTgctttcgatgacgccacagccacgctgagttcctcttattaaaaaggattctgctttgaagacaaccgaaagaTTCTCCCTGGTTTTTTGTGGGCTCTTAGAAGTTTACAACACAGGCATAACGCAGACGTATAAATGCTCACATTGATGTCAGCTTCCACACTGTAGTTTTATGGGGATGGTGATCTCTCATGACATGCTGCTGGGCCGCTGGCGGCTTTCTCTGGAGCTGTTTGGCCGTGTTTTCATGGAGGACGTTGGAGCAGAACCAGGATCTATCCTGACAGAGCTGGGGGGTTTTGAGGTAAAGGAGTCCAAGTTTCGTCGTGAGATGGAGAAGCTGCGTAACCTTCAGTCGCGTGATCTGGCCCTGGAGGTGGACCGAGACCGTGAGCAGCTCATCCAGCAGACCATGCGGCAGCTGAACGCTCACTTCGGCCGCCGCTGTACCACCACACCCATGGCCGTGCACCGCGTAAAGGTGACATTCAAGGATGAGCCTGGAGAGGGCAGTGGTGTCGCTCGCAGCTTCTACACCGCCATCGCTCAGGCCTTCTTGTCCAACGACAAGCTGCCCAATCTGGACTGCGTGCAGAGCGTCAGCAAGGGGATGCAGGCTAGCAATCTTATGCAGCGGCTGAGGAACCGAGATCGTGAGCGTGAGAGGAGGAGCGGAGGACTGAGAGCTGCATCCAGACGAGATCGTGACAG

Function

symbol description
ubr5 Predicted to enable several functions, including ubiquitin binding activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Predicted to be involved in several processes, including negative regulation of histone H2A K63-linked ubiquitination; protein polyubiquitination; and regulation of double-strand break repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human UBR5 (ubiquitin protein ligase E3 component n-recognin 5).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:1901315 negative regulation of histone H2A K63-linked ubiquitination biological_process
GO:2000779 regulation of double-strand break repair biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-6559 Predicted to enable several functions, including ubiquitin binding activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Predicted to be involved in several processes, including negative regulation of histone H2A K63-linked ubiquitination; protein polyubiquitination; and regulation of double-strand break repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human UBR5 (ubiquitin protein ligase E3 component n-recognin 5).

Ensembl:

ensembl_id ENSDARG00000018192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021620 False 8388 mRNA 0.55 59 52542550 52646789
TCONS_00021846 True 726 lncRNA 0.55 4 52557028 52562908

Neighbor

gene id symbol gene type direction distance location
XLOC_011091 NA coding downstream 2414 52526852 ~ 52540136 (-)
XLOC_011090 pdcl coding downstream 575704 51950510 ~ 51966846 (-)
XLOC_011089 NA coding downstream 594681 51897756 ~ 51947869 (-)
XLOC_011088 NA coding downstream 652816 51875371 ~ 51889734 (-)
XLOC_011087 CABZ01074290.1 coding downstream 787044 51755392 ~ 51755506 (-)
XLOC_011093 NA coding upstream 37969 52684758 ~ 52688445 (-)
XLOC_011094 azin1a coding upstream 59270 52706059 ~ 52736549 (-)
XLOC_011095 spire1b coding upstream 139855 52786644 ~ 52821023 (-)
XLOC_011096 TPPP coding upstream 228304 52875093 ~ 52879741 (-)
XLOC_011097 zdhhc11 coding upstream 254701 52901490 ~ 52916248 (-)
XLOC_010626 CR392024.2 misc downstream 31647375 20895112 ~ 20895175 (-)
XLOC_011080 NA non-coding downstream 1462120 51078667 ~ 51080430 (-)
XLOC_011100 NA non-coding upstream 827669 53474458 ~ 53481394 (-)
XLOC_011101 CR759845.1 non-coding upstream 938918 53585707 ~ 53637122 (-)
XLOC_011102 NA non-coding upstream 993457 53640246 ~ 53649995 (-)
XLOC_011103 NA non-coding upstream 1004113 53650902 ~ 53655539 (-)

Expression


Co-expression Network