XLOC_011093


Basic Information

Item Value
gene id XLOC_011093
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 52684758 ~ 52688445 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021847
ttgtaatCCACATTAGGAGAAAGAGGAATGAAGCGGAAAGTGGACGATACTTTTCACAGGGCTTCTGACAGAAGCAAACCATCTACTCAGCGGAAACGCATCAAAGTTTCAGAAATGGAGAACACGAATGACACAGAGATGACCAGCTTTCAGGATAAAACAAGCTCAGGAGGAAGAGGAGTGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGCGGAGTCAAACCATCTGCTCTGCGGAAACGCATCAAAGTTTCAGAGCTGGAGAACACAAGAGAAG
>TCONS_00021848
CTTGTGTATTAAATATGATACGCGCTACTTTATAGGATAAAGGTCACATAAACCACATACACTCGCGGAAGACGATGTGTTGCTTGGCAACAGCAGAACGCGTTCTAACGGTTGTACAGGGTCTGCTGACGCGCGTTAACTCGGCTTCAGTAATCTGCAGGAACAAGAAATGAAGGTTGATTGTAAAAGTTGCTCTCGGTCGATAAACACATCGAGCAAAACAGTTGAGCGATTTCAGACGATGTCTACAAGACCTTTCGAGTTTCTAGCAGAAAAGGAAAGTTGTAAGACCTTGACGGGAGAAAGAGGAATGAAGCGGAAAGTGGACGATACTTTTCACAGGGCTTCTGACAGAAGCAAACCATCTACTCAGCGGAAACGCATCAAAGTTTCAGAAATGGAGAACACGAATGACACAGAGATGACCAGCTTTCAGGATAAAACAAGCTCAGGAGGAAGAGGAGTGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGCGGAGTCAAACCATCTGCCCACCAGAAACGCATCAAAGTTGCAGAGCTGGAGAACACTAGAGAAGACGCCGACACAGAGACGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021847 False 286 lncRNA 0.45 2 52684758 52686317
TCONS_00021848 True 588 lncRNA 0.46 3 52685610 52688445

Neighbor

gene id symbol gene type direction distance location
XLOC_011092 ubr5 coding downstream 37969 52542550 ~ 52646789 (-)
XLOC_011091 NA coding downstream 144622 52526852 ~ 52540136 (-)
XLOC_011090 pdcl coding downstream 717912 51950510 ~ 51966846 (-)
XLOC_011089 NA coding downstream 736889 51897756 ~ 51947869 (-)
XLOC_011088 NA coding downstream 795024 51875371 ~ 51889734 (-)
XLOC_011094 azin1a coding upstream 17614 52706059 ~ 52736549 (-)
XLOC_011095 spire1b coding upstream 98199 52786644 ~ 52821023 (-)
XLOC_011096 TPPP coding upstream 186648 52875093 ~ 52879741 (-)
XLOC_011097 zdhhc11 coding upstream 213045 52901490 ~ 52916248 (-)
XLOC_011098 brd9 coding upstream 237694 52926139 ~ 52966865 (-)
XLOC_010626 CR392024.2 misc downstream 31789583 20895112 ~ 20895175 (-)
XLOC_011087 CABZ01074290.1 non-coding downstream 929252 51755392 ~ 51755506 (-)
XLOC_011080 NA non-coding downstream 1604328 51078667 ~ 51080430 (-)
XLOC_011100 NA non-coding upstream 786013 53474458 ~ 53481394 (-)
XLOC_011101 CR759845.1 non-coding upstream 897262 53585707 ~ 53637122 (-)
XLOC_011102 NA non-coding upstream 951801 53640246 ~ 53649995 (-)
XLOC_011103 NA non-coding upstream 962457 53650902 ~ 53655539 (-)
XLOC_011104 NA non-coding upstream 997869 53686314 ~ 53699443 (-)

Expression


Co-expression Network