XLOC_011097 (zdhhc11)


Basic Information

Item Value
gene id XLOC_011097
gene name zdhhc11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 52901490 ~ 52916248 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021628
ATGCCCACATTCGACAACAGCAAACATCCACATGTGATTGACAATCTGCACTGCACCCTGTGTGAGGTGGACGTGAGCCCTAAAGCTAAACACTGCAGCACATGCAACAAATGCATCGCAGACTTTGACCATCACTGCAAATGGCTGAACAACTGTGTGGGAGGAAGAAACTACTGGTTCTTCTTCACCGCCGTCTCGTCTGCTGTGATCGGCGTGATCCTCCTCATTCCCCTGGTTCTGTTTGTCTTTATCGAGCACTATGTCAATCCGGCAGTCCTGCGAACGGCACCACAGTTTCAGACTGTGAAAGGTAACGGGACGTGGCTGGTTTTCCTGCCGGTGGCTCCAGTAGAGACGAGCTCCATCAGTCTGCTGGTTGTGTCCTTCATTACAGCTCTTCTATCTCTGGCTGCTCTCCTGCTGCTCTGCCATTTACTCTGCTTCCACATTTACCTGCTGTCTCAGGGAATCAGCACTTACGAGTACATTGTAAGGAAACGACAGTCACCGAATCCCAAAGAGAAGCAGCAGGTTCCTCCAGCACTGCCGTCTAATGGAGCCACAGCACAGAGTCTGGAGCTGCAGGAGCCACCGCTGAACTGTGACGCTCCGCTGTCCAGCAGATCCTGTACCTTCAAACTGGAAGACAGAGGACCAATGCCAGAACCCATCTGTGCTGAGATGGAAGAAGCCAGTGGAGAGCATCATCTGAGCTACAGCTCTGAATCAGCAACACAGAAGATTGCAGGTGAGTctgtgatgtcacttcctgtggTCTGGAGTCTCAGCGAGACAGAGAGGCCTCAGGCCTCACAGGTGGAGGTGAAGCCGCTGGAGGGACGGCCGGTGGTGCAAGACCCCCTGGGCAGCTCCATCATGGACACGGCGCTGGTTCATCAGCAGCTCATGACGGAGCAGCCGCAGTATTTACACTTTAAACAGAAGATGCCATGA

Function

symbol description
zdhhc11 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation. Predicted to be located in endosome membrane. Orthologous to several human genes including ZDHHC11 (zinc finger DHHC-type containing 11).

GO:

id name namespace
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-795 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation. Predicted to be located in endosome membrane. Orthologous to several human genes including ZDHHC11 (zinc finger DHHC-type containing 11).

Ensembl:

ensembl_id ENSDARG00000076202

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021628 True 954 mRNA 0.53 9 52901490 52916248

Neighbor

gene id symbol gene type direction distance location
XLOC_011096 TPPP coding downstream 21749 52875093 ~ 52879741 (-)
XLOC_011095 spire1b coding downstream 80467 52786644 ~ 52821023 (-)
XLOC_011094 azin1a coding downstream 164941 52706059 ~ 52736549 (-)
XLOC_011093 NA coding downstream 213045 52684758 ~ 52688445 (-)
XLOC_011092 ubr5 coding downstream 254701 52542550 ~ 52646789 (-)
XLOC_011098 brd9 coding upstream 9891 52926139 ~ 52966865 (-)
XLOC_011099 si:ch211-269k10.4 coding upstream 331583 53247831 ~ 53259409 (-)
XLOC_011100 NA coding upstream 558210 53474458 ~ 53481394 (-)
XLOC_011101 CR759845.1 coding upstream 669459 53585707 ~ 53637122 (-)
XLOC_011102 NA coding upstream 723998 53640246 ~ 53649995 (-)
XLOC_010626 CR392024.2 misc downstream 32006315 20895112 ~ 20895175 (-)
XLOC_011091 NA non-coding downstream 361354 52526852 ~ 52540136 (-)
XLOC_011089 NA non-coding downstream 953621 51897756 ~ 51947869 (-)
XLOC_011088 NA non-coding downstream 1011756 51875371 ~ 51889734 (-)
XLOC_011087 CABZ01074290.1 non-coding downstream 1145984 51755392 ~ 51755506 (-)
XLOC_011103 NA non-coding upstream 734654 53650902 ~ 53655539 (-)
XLOC_011104 NA non-coding upstream 770066 53686314 ~ 53699443 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_02018950_02030464 NA coding CI01000086 null 2018820 ~ 2030525 (-)