XLOC_011101 (CR759845.1)


Basic Information

Item Value
gene id XLOC_011101
gene name CR759845.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53585707 ~ 53637122 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021633
gaaatattagaCAAAGAAAACTCACAGCCGAGCGAATAATTCCGACTCAACTGTACATCATGTTATTTGtggaaaacaagacaaacactTCATCTGTGCATCAGCTGCTGGTCAAGTGTGGTGAACTGGAGGATTTGAGACAGAGCCTGATGTCTTCTTCATCGTCAGCGGTGCTTTAATGGATAGTAAATCATGGTCTTCCTCAAACTGAAGAACTGACTGTGTTCTGGATCTTTCTGTGGGACCAGAAGCGTCTCCAGCACTGAAGCCGTGCCATATTTAGTTGGGTTTTTTTGTATACAGTATAGTTTTTCCTTCATCATTTCTGAACGCTTTGAATGAATGATGCCTTACTGTATTTACTGTCCTCACTGCAGCTGGAGCTTCAACAGAGAATGTACAAATCatgtcagttattattattattattattaaagttatgaTCATGATGCTCTCCTGGCAGTCTGAAGGGATACAGGAATGAGCTGTTTTTATGTTTCTGCAATAATAAATGAAGCGTCACTAAATGaacaattataaacaattatCCTTCATAGTGCACTCAAAATACTGCATTTGCAACTTTGCATGTGATGTTACTTCATTTAGCCATTTCTATTAAAAATCAAGAAATTGTTTGAAATTGCAAA
>TCONS_00022286
agCACAATTTGCAATTTCAAACAGTTTCTTGATTTTTAATAGAAACGGCTAAATGAAATAACATCACATGCAAAGTTGCAAATGCAGTATTTTGAGTGCACTATGAAGGataattgtttataattgttCATTTTGGTGACGCTTCATTTATTATTGCAGAAACCTAAAAACAGCTCATTCCTGTATCCCTTCAGACTGCCAGGAGAGCATCATGAtcataactttaataataataataataataactgacatGATTTGTACATTCTCTGCTGAAGCTCCAGCTGCAGTGAGGACAGTAAATACAGTAAGGCATCATTCATTCAAAGCGTTCAGAAATGATGCAGGAAAAACTATACTGTATACAAAAAAACCCAACTAAATATGGCACGGCTTCAGTGCTGGAGACGCTACTGGTCCCACAGAAAGATCCAGAACACAGTCAGTTCTTCAGTTTGAGGAAGACCATGATTTACTGTCCATTAAAGCACCGCTGACGATGAAGAAGACATCAGGCTCCGTCTCAAATCCTCCAGTTCACCACACTTGACCAGCAGCTGACGCACAGATGAagtgtttgtcttgttttccaCAAATAACATGATGTACAGTTGAGTCGGAATTATTCGCTCGGCTGTGAgttttctttgtcaaatatttcctaaatgatgttgaacagactcaggaaatgttcacagtatgtctgataatatctgttcttctggagaaaatctgatttgttttatttcggctagaataaaagcagttcttaattgttttaaagccattttaaggtcaatattattagcccccttcagcaatattagttttggattgtctccaggacaaacttttatgattagaaatgtgctgaaaaaatctctccaaCAAACCGAAATTGGAGGAATAAATATTCacacgggctaataattctggctttagctgtctgtgtgcgtgtttgagtgtACTGACAAAAATGGTtcattaaatttataataaaaataaaaatgtaaggtaagtggttgtaaacaatttatattggctggaaatgaacaaattaagtgcagtaatattcaacttaatatgtttgtttatatatatatatatatttcccatataaattgtttgcaactacgTACCTCAAAAATTCTAGcacctaaacaaacaaacacacacacagaaaccctGAGCTAAAAAGCATTCTAGCGctcttattaaaataataataaactactgTTTTTTTGTTGGTATTAAAAATAGTTTGCCGCTCATCAGTAAAATCACTTTTGTGTGAAACACTTTCTGAAAACAGCAGCTCAATCTGTACATTTCAACATGAGACAGATGCGGGAGATTTTGTAAGGTGTGAATCATTTATAAACAAATCGCAGAAAAAGGTCAAATAAGCAGTGCTTGATGATTCCCccgagtcaaacagtattcaggttagagaaattTTATAATAATGAAGACTATATACGgttcttttacatttaattatacaatTTCTGTATCCTGAATAATGTTTGACTCGGGGGAATCATCAAGCACTGCTTATTTGACCTTTTTCTGcaatttgtttattgttgtttataaATGATTCACACCTTACAAAATCTCCCGCATCTGTCTCATGTTGAAATGTACAGATTGAGCTGCTGTTTTCAGAAAGTGTTTCACACAAAAGTGATTTTACTGATGAGTGGCAAACTATTTTTaagaccaacaaaaaaaaaacagtagtttattattattttaataagagCGCTAGAATGCTTTTTAGCTCagggtttttgtgtgtgtgtgtgtttgtttaggtgCTAAAATTTTTGAGGTAcgtaaaacaatttatttgggaaatatatatatatctatataaacaaacattaagttgaatattactgcatttaatttgtttatttccagccaatataaattgtttacaaccacttactttacatttttattttttttattaatttaatgaaccATTTTTGTCAGTacactcaaacacgcacacagacagctaaagtcagaattattagcccgtgtGAATATTTATTCCTCCAATTTCGGTTTGttggagagattttttcagcacatttctaatcataaaagtttgttctggagacaatccaaaactaatattgctgaagggggctaataatattgaccttaaaatggctttaaaacgattaagaactgcttttattctagccgaaataaaacaaataagattttctccagaagaacagatattatcagacatactgtgaacatttcctgagtctgttcaacatcatttaggaaatattagaCAAAGAAAACTCACAGCCGAGCGAATAATTCCGACTCAACTGTACATCATGTTATTTGtggaaaacaagacaaacactTCATCTGTGCATCAGCTGCTGGTCAAGTGTGGTGAACTGGAGGATTTGAGACAGAGCCTGATGTCTTCTTCATCGTCAGCGGTGCTTTAATGGATAGTAAATCATGGTCTTCCTCAAACTGAAGAACTGACTGTGTTCTGGATCTTTCTGTGGGACCAGAAGCGTCTCCAGCACTGAAGCCGTGCCATATTTAGTTGGGTTTTTTTGTATACAGTATAGTTTTTCCTTCATCATTTCTGAACGCTTTGAATGAATGATGCCTTACTGTATTTACTGTCCTCACTGCAGCTGGAGCTTCAACAGAGAATGTACAAATCatgtcagttattattattattattattaaagttatgaTCATGATGCTCTCCTGGCAGTCTGAAGGGATACAGGAATGAGCTGTTTTTATGTTTCTGCAATAATAAATGAAGCGTCACTAAATGaacaattataaacaattatCCTTCATAGTGCACTCAAAATACTGCATTTGCAACTTTGCATGTGATGTTACTTCATTTAGCCATTTCTATTAAAAATCAAGAAATTGTTTGAAATTGCAAA
>TCONS_00022287
ATTTCAAACAGTTTCTTGATTTTTAATAGAAACGGCTAAATGAAATAACATCACATGCAAAGTTGCAAATGCAGTATTTTGAGTGCACTATGAAGGataattgtttataattgttCATTTTGGTGACGCTTCATTTATTATTGCAGAAACCTAAAAACAGCTCATTCCTGTATCCCTTCAGACTGCCAGGAGAGCATCATGAtcataactttaataataataataataataactgacatGATTTGTACATTCTCTGCTGAAGCTCCAGCTGCAGTGAGGACAGTAAATACAGTAAGGCATCATTCATTCAAAGCGTTCAGAAATGATGCAGGAAAAACTATACTGTATACAAAAAAACCCAACTAAATATGGCACGGCTTCAGTGCTGGAGACGCTACTGGTCCCACAGAAAGATCCAGAACACAGTCAGTTCTTCAGTTTGAGGAAGACCATGATTTACTGTCCATTAAAGCACCGCTGACGATGAAGAAGACATCAGGCTCCGTCTCAAATCCTCCAGTTCACCACACTTGACCAGCAGCTGACGCACAGATGAagtgtttgtcttgttttccaCAAATAACATGATGTACAGTTGAGTCGGAATTATTCGCTCGGCTGTGAgttttctttgtcaaatatttcctaaatgatgttgaacagactcaggaaatgttcacagtatgtctgataatatctgttcttctggagaaaatctgatttgttttatttcggctagaataaaagcagttcttaattgttttaaagccattttaaggtcaatattattagcccccttcagcaatattagttttggattgtctccaggacaaacttttatgattagaaatgtgctgaaaaaatctctccaaCAAACCGAAATTGGAGGAATAAATATTCacacgggctaataattctggctttagctgtctgtgtgcgtgtttgagtgtACTGACAAAAATGGTtcattaaatttataataaaaataaaaatgtaaggtaagtggttgtaaacaatttatattggctggaaatgaacaaattaagtgcagtaatattcaacttaatatgtttgtttatatatatatatatatttcccatataaattgtttgcaactacgTACCTCAAAAATTCTAGcacctaaacaaacaaacacacacacagaaaccctGAGCTAAAAAGCATTCTAGCGctcttattaaaataataataaactactgTTTTTTTGTTGGTATTAAAAATAGTTTGCCGCTCATCAGTAAAATCACTTTTGTGTGAAACACTTTCTGAAAACAGCAGCTCAATCTGTACATTTCAACATGAGACAGATGCGGGAGATTTTGTAAGGTGTGAATCATTTATAAACAAATCGCAGAAAAAGGTCAAATAAGCAGTGCTTGATGATTCCCccgagtcaaacagtattcaggttagagaaattgtataattaaatgtaaaagaacCGTATATAGTCTTCATTATTATAACTATTCAGTGAAATGAatcttcattaaagttacaaatgttgtacttttttagcctgaatgctttaaactcttgaagtttcacaaactaataaaCACAAACGACCTGATCTCGAACTCTCCTCACATGCTCATgacaggcgggagccctgggctcaattattcccgagctcagggttctctcccgggacagcatgccaaacctgctatgatcatcaagcaatatctaagtgtgaactcttgaaatgtcttTAAAACACATGCTAATGATAAAGATTCCCTCTGTTATAGTTATACTCTGTAATAACTCCACAGATCTCATGCGTTCTCACCTGTTGTGTTGATCAACTGTAATCCCGACTCAACACTGAGATTTGACTATCGTGGACACACACAATGCGACATCAATGCTGAAACCATACATTGAGCAGCCCAAACATATACAGCTGAATCAGAATTATTCGGCCTGTtcatttttcccaatttctgattaacagagagcagatttcttcaacacatttctaatcataatagtttaataact

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097039

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021633 False 650 lncRNA 0.37 1 53585707 53586356
TCONS_00022286 False 2954 lncRNA 0.34 2 53585707 53637122
TCONS_00022287 True 2028 lncRNA 0.36 1 53635082 53637109

Neighbor

gene id symbol gene type direction distance location
XLOC_011100 NA coding downstream 104313 53474458 ~ 53481394 (-)
XLOC_011099 si:ch211-269k10.4 coding downstream 326298 53247831 ~ 53259409 (-)
XLOC_011098 brd9 coding downstream 618842 52926139 ~ 52966865 (-)
XLOC_011097 zdhhc11 coding downstream 669459 52901490 ~ 52916248 (-)
XLOC_011096 TPPP coding downstream 705966 52875093 ~ 52879741 (-)
XLOC_011102 NA coding upstream 3124 53640246 ~ 53649995 (-)
XLOC_011103 NA coding upstream 13780 53650902 ~ 53655539 (-)
XLOC_011104 NA coding upstream 49192 53686314 ~ 53699443 (-)
XLOC_011105 znrf2b coding upstream 96592 53733714 ~ 53800047 (-)
XLOC_011106 NA coding upstream 229172 53866294 ~ 53867992 (-)
XLOC_010626 CR392024.2 misc downstream 32690532 20895112 ~ 20895175 (-)
XLOC_011093 NA non-coding downstream 897262 52684758 ~ 52688445 (-)
XLOC_011091 NA non-coding downstream 1045571 52526852 ~ 52540136 (-)
XLOC_011089 NA non-coding downstream 1637838 51897756 ~ 51947869 (-)
XLOC_011088 NA non-coding downstream 1695973 51875371 ~ 51889734 (-)
XLOC_011107 NA non-coding upstream 274785 53911907 ~ 53979683 (-)

Expression


Co-expression Network