XLOC_011102


Basic Information

Item Value
gene id XLOC_011102
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53640246 ~ 53649995 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021849
TGGACGTACTATCCCGGAAGCATATCATATGATGGTCCTCAAGGAACCTCCGCTCTGCCCGCACATCATTGAGCTGTACGAGTACGCCATGGAGGGAAGGAATAACTACCTGGTCATGGAGTACGCGTCCTCGTACATAACCTTGGATAAATTCATCAGGAAGAACAATGGCCTCCTGAGTGAGAGTGTTGCGCGGCAGCTGATCATGCAGCTCATTATCGCAACACAGCGCTGCCTTGAGCATGGCATAGAACATGAGTCCATACATAAAGAAAACATCCTGGTCAATCCAAAGACCCTGCAGCTCAAGCTGATTGATTTTGGCAACAGTTATTATACTCAAAAAGGCTACTGGAGATCCCCCTATCTTGGAGTAACGAGATACCGTCTACAGGAGGGGGAACCCTACAGATCCATTCGTTTTGCTGTTGATTCACATGTCATGGCTGTTTTACTAATGCTGTCCTATATGGTCAATGGATATTTCCCTTACTCCAGATATAAACGTCCACGATTTCACCCCAGATTGTCAGCAGAATGCAAGGATCTTCTTCGGTGGATAATCAGTTACCACCCTCGAACAGGACCTGTTTTAGAGGAGATTATAGAGCACAAGTGGTTCAGCATGACGTAGAGCCCATCAGCAGCAGGAAACAGGTTTTATACTTCCATTTACGTCAGATTGTTTTGCTGTTTTCCGCTTCTGCTTCCCAAATTCTGCACTTCCTCCTGCGAGTGTTGCAGTCAGAGCTGCATGTAAATGAGGGCCGGTTGAAGCGTCCCTATTGGTCCACCAGCTCTAGACCGACAGCTCCTCCTTTAGCCAATCAGGTGAGGAAGGAAGCTGATGTCAGTCTAATGGCGGCCGATGCGCACAGGCGACGCCGGAGATTGAGTGTTAGCGCTAATCCTCAGCTGGGGTAGAATGTGTCTGCGGCAGGACAGCATTAATCGTTTGAAATAAGTAAAGGAAAGCAGGTTCATTCACGTTTAGACAGGACGTAGTGTTTGATATGAACTGGGTTAGCACCGACTGTAGAGTAAATAGTCATATTAAGGGAAATAGTCACAGATTAATAAATGAAACTGCTGGAAAGGGGGATTTATTAGCATACTGGTGTGGTTTATTTCTCTAGCTGTAGGATTAATATTAAATGGTAAAGTCTGTGTATTATTACTGTAGTGCGTCAATACTTTATAAAGACAGAAAGCCTGGTTTAGACCGTGCTTGTAGCTCTAACGGGACTTTAGGCAGGTTTACGTGAGATAAGCGCATATAACAGGGGCGTCGTGGGCCGGTTTTGAAGGCGTTTTCTCTTTAACAGATAGGATAGGGTGGTGTAGATGGCGCTGACGGGGCAGGATTATATGGGCCGATACGCTAGATATAAGAGCCTCCTGCCACAGACAGATTTTAGCCCAGCTGTGGATTTGTCAGATCTGATGAGGATTATTTCTAGTGCTGCTGCTCTCATCTTTCTGCTTTCTTCTTCTTTCACTTGTTCTCCAAGCGAGCGCTGGATTTCTGCAGATTAGCTTTAACATAAACCAGCAGCtcaaatagtttaattttaaccGCAGGGTTTGGTAAATAACAGCATTTTAGTCAAGACTGGGGGATTTAGATAGTGTTTATGGACGCAAGTGTAGTTTAGAGTTGGACTTTGTAATagatttattgatattattaagcTCATTGATAATGTTGTGGAAATCCTGTGCTCGTTTGTAGAAATTCATTGGTCCTCATTGATGAAACATTTGTAAATATCGGAGTAAGTTAGTGATAGATAAAGGGTGGATAGATAATCGGGTTCGTTAATAAATTATCATCAGTCAGGGTTAGGGTTTAGAGTTAGACATATAGAAAATAGAGGAATAATTATCTTTCATTAATGAGGCCAAATCTcagctctttctttctttttctgcttTTTCTGCTTTCCCAGTTCCTCTAAACATTTTGTTTTGGGATTAGGGTgtttgttagggttagggttgggttAGGCCTTTATTTTGAAGGGTTAGGGTGtttgttagggttagggtaaggGTTGGGTTAGGCCTTTATTTTGAAGGGTTAGGGTGTTTGTTAGGGTAAGGGTTGGGTTAGGCCTTTATTTTGAAGGAAGGGTTAGGGCTGGGGTGTTTGTTAGGGTAAGGTTGGGTCAGGTTAGGGTTTGGTTAGGATTAGGTTTGGGTTAGGCTTTTATTTTAAGGGTTAGTTATtcattgttttgctttatttctgGTTTCTTTAGTTTCTCCTGTCTGTCCTCTTCTCCATCTCTGTTGTGTGAGCACTGCACAGATTGTTATTTAAGAGCGATTGTTAATTATTATACACTTCTCTGTCCTCGCCTGTGGGGATTGGTCGCCATTAGAGTGACGTCAGCTTCCCTCCTCGCCTGATTAGCTGGAGGAGGAGCTGTTAATCTAGAGCTAATGGACCAATGGGGATGCTTCAGCCGGCCCTCATTTGCATGCAGCTCTGACTGCGACACTCGCTGGAGGAAGTGCACAATGTGGGAAGCAGAAGCGGAAAACAGCATCATGTCAGAAAACAATGGAAGTATGAACTCCTGATGATGTTATTTCGTCACTGACCACATGTGTGCTGCTCTTTCTATGATTTCTGTGAAATTGAGACTATGACCCCTATGGAGTGTGTTGAAGCTGTTTTCTGTTGATCAAACTGTAAACTATTGTCTTCATTAAACTGTATCTTTGACTCCTGCTCTTTGTTCATCACACCACAGACCTAAGCTTTTCTCTCATCATGTGCTGCAGATGATGtgataataaaagtgatttgatttgacacaAAACGATACGTCAAACATGTTTTTATAACTGCAGACTCAATTTAGCCTTCATATAACAACATCATGTAATGTTTAAAGCTCATTGCCTTGCCATTTGTAGGATAATATGACAcactccccacatcattctttaaAACGGTGTTCAACTGTCTAGAAATGGATCTCCTAacagtggtaaatgcttcacttctctcagggactTTTCCAAACATACCCATAACTGCAAAGAGCATCCTTGAAATCACCctatcattgaaaaaaaaagctgtttttaagcAAGTTAACACGTTCTTAAGCTGCAAGGGGTGTTTAGACAGTGTTCAATCTGGTTTCAAAGCACATCACAGTACAAAGAGCGCTCTTATAAGGATAATCAATGACAATCGCCACAATATGGATTCAGGTAAACTAACAGTGCTGGTactgctcgatctcagtgctgcgTTTGACACTGCGATTACAGTTTACTTCTGTTTTAGGATTgaaagattttacaatgttttaagactagaattgtaagattttacaatgttttaagactagaattgtaagattttacaa
>TCONS_00021634
AGCAGCTCAGGTGAAAACAGCAGCTCAGGTGAAAACAGCAGCCCAGCTGAAAACAGCAGCCCAACTGAAAACAGCAGCCCAACTGAAAACAGCAGCTCAGGTGAAAACAGCAGCTCAGCTGAAAACAGCAGCCCAACTGAAAACAGCAGCTCAGCTGAAAACAGCAGCTCAGGTGAAAACAGCAGCTCAGCTGAAAACAGCAGCTCAGCTGAAAACAGCAGCCCAACTGAAAACAGCAGCTCAGCTGAAAACAGCAGCTCAGGATCTATACTTGACAAATATGTGCTTGGAGAGAAGCTGGGACAGGGAAACGGTGGCACTGTCTATCTGGCTACACGGAAATCTGACGGCCAGAAGGTTGCCATAAAAGTTGTGAATAAGGACTTAAGGAGTTTCGGATACTGGTACACTATGAATGGACGTACTATCCCGGAAGCATATCATATGATGGTCCTCAAGGAACCTCCGCTCTGCCCGCACATCATTGAGCTGTACGAGTACGCCATGGAGGGAAGGAATAACTACCTGGTCATGGAGTACGCGTCCTCGTACATAACCTTGGATAAATTCATCAGGAAGAACAATGGCCTCCTGAGTGAGAGTGTTGCGCGGCAGCTGATCATGCAGCTCATTATCGCAACACAGCGCTGCCTTGAGCATGGCATAGAACATGAGTCCATACATAAAGAAAACATCCTGGTCAATCCAAAGACCCTGCAGCTCAAGCTGATTGATTTTGGCAACAGTTATTATACTCAAAAAGGCTACTGGAGATCCCCCTATCTTGGAGTAACGAGATACCGTCTACAGGAGGGGGAACCCTACAGATCCATTCGTTTTGCTGTTGATTCACATGTCATGGCTGTTTTACTAATGCTGTCCTATATGGTCAATGGATATTTCCCTTACTCCAGATATAAACGTCCACGATTTCACCCCAGATTGTCAGCAGAATGCAAGGATCTTCTTCGGTGGATAATCAGTTACCACCCTCGAACAGGACCTGTTTTAGAGGAGATTATAGAGCACAAGTGGTTCAGCATGACGTAGAGCCCATCAGCAGCAGGAAACAGGTTTTATACTTCCATTTACGTCAGATTGTTTTGCTGTTTTCCGCTTCTGCTTCCCAAATTCTGCACTTCCTCCTGCGAGTGTTGCAGTCAGAGCTGCATGTAAATGAGGGCCGGTTGAAGCGTCCCTATTGGTCCACCAGCTCTAGACCGACAGC

Function

GO:

id name namespace
GO:1903224 regulation of endodermal cell differentiation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097042

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021849 False 3386 lncRNA 0.42 3 53640246 53645906
TCONS_00021634 True 1228 processed_transcript 0.48 6 53642820 53649995

Neighbor

gene id symbol gene type direction distance location
XLOC_011101 CR759845.1 coding downstream 3124 53585707 ~ 53637122 (-)
XLOC_011100 NA coding downstream 158852 53474458 ~ 53481394 (-)
XLOC_011099 si:ch211-269k10.4 coding downstream 380837 53247831 ~ 53259409 (-)
XLOC_011098 brd9 coding downstream 673381 52926139 ~ 52966865 (-)
XLOC_011097 zdhhc11 coding downstream 723998 52901490 ~ 52916248 (-)
XLOC_011103 NA coding upstream 907 53650902 ~ 53655539 (-)
XLOC_011104 NA coding upstream 36319 53686314 ~ 53699443 (-)
XLOC_011105 znrf2b coding upstream 83719 53733714 ~ 53800047 (-)
XLOC_011106 NA coding upstream 216299 53866294 ~ 53867992 (-)
XLOC_011107 NA coding upstream 261912 53911907 ~ 53979683 (-)
XLOC_010626 CR392024.2 misc downstream 32745071 20895112 ~ 20895175 (-)
XLOC_011093 NA non-coding downstream 951801 52684758 ~ 52688445 (-)
XLOC_011091 NA non-coding downstream 1100110 52526852 ~ 52540136 (-)
XLOC_011089 NA non-coding downstream 1692377 51897756 ~ 51947869 (-)
XLOC_011111 NA non-coding upstream 641667 54291662 ~ 54296444 (-)

Expression


Co-expression Network