XLOC_011105 (znrf2b)


Basic Information

Item Value
gene id XLOC_011105
gene name znrf2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53733714 ~ 53800047 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021636
agtgagtgtgtgtgtgtatgcgtgtgtaaatgtgtgcgtgtgtgtttgtttttcttgaaTAATTCAGATCGCAGGGACCTGAAGGCTGGCATGGGCGCCAAACAGAGCAGTCCTGCTGCCAACGGCCGCACGCGCGCGTACTCGGGCTCGGATCTACCGTCGGCCACCGCGTCCGTTAACGGCAGAACAGCGGCGGTTTTACGGTATAACAACAGTCAAGGAGCCTCAGGTGCTACATCTGCCGCTTCAGCGTCTTCCTCCGCGGCTGTGGCCTCGCAGTTTATCTCCTCCAGGACGCGCTCCGTCGGCCCGAGCGCGAGACCCCAATCCGGGATCAACATCCCGAACTCTGGAGCGTACAGTTCGGCGGATTCCGGTAACAGCACACCGGAGGAGCCCGGCGGAGAGAGAGAGCGCTCCACCGGCGCGCCGAGACTCGTGATCGGCTCGCTACCTGCTCACCTGTCGCCTCATCTCTTCGGAGGTTTCAAGTGCCCGGTTTGCTCCAAGTTTATCTCCTCAGATGAGATGGACCTTCATCTGGTCATGTGTTTGACCAAACCACGTGTCACATACAACGAGGATGTGCTGTCGAAGGATGCTGGAGAATGTGCAATATGTCTGGAGGAGCTGCTGCAGGGAGACACCATCGCACGCCTGCCCTGCCTCTGCATTTATCACAAAGGCTGTATTGACGAGTGGTTTGAAGTGAACCGATCGTGTCCTGAACATCCTGCAGATTAAAGCGCCTCTCTCACCTTTTTTGcacagCCTCTTCCGCTGGTGAGACGCCTCCTGTCCTTCTAAAGGGACAGTAATGTGAATCCTCTTCCTCCTCATAGACACTGTGACCGAGCGGGACGTCCCGATCAGAGAACTCGGCCCTTCCTAGTCGCCATATTAACCCTAGTGTGCCAAAACTCATTCAGGGAAACTGGCAGTCATCATACTGGCTGCTTTCTGCTCTCTGATTGGCCGGACTTGAGGTCAGCTGACTCCCATCTCGTTGCTGATTGGACGATGGGTTGATTGTTCTGCTAAATGGGACCGTGTCTCTCAGTGCCTTAATTTTCAGATGCGGCGGGCAGAAAAAGCTGCGTTTGGGACAGCAGAAGGGCTGGATGGAAACGTCTGGATATGAAGGATGTGTTTCCTGATTCAGGACGGCTCCGTGCCACGGCCTGTGTTTGCCCCACACACTGGAAAAAGccattagttactttactttaaagcTGTGAGTCAAGCcattgctttaaaagcagcacgATGATTCTACTTTAGAAATAAACATAGTCAGTAAACCCACTGACTCTAAACGTTTATAACTATACACTTAGTTTGTGACCGTAATAATTAAAGTCAGCGAGTTTCCTCTGTCTTtgttgagtaaagtcaactaatggcgTTTTACAGTGTTGATCTCCAGTCTGGTAGCAATAGCTGGATCTTCATCTCTGCAGCTTTTATGCAAGtcaacatttcagattttttccTTCATGTCGAGATTATTCTGGGCCTTAATTCAGCACATCTCGTCCAGGTCAGAATCAGAAGAAGAAAAAGTGCTAAAGGATATTTTGCATAaagaaaataaagtgttttttttctggg

Function

symbol description
znrf2b Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in bounding membrane of organelle; cell projection; and presynaptic membrane. Orthologous to human ZNRF2 (zinc and ring finger 2).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-24 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in bounding membrane of organelle; cell projection; and presynaptic membrane. Orthologous to human ZNRF2 (zinc and ring finger 2).

Ensembl:

ensembl_id ENSDARG00000098792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021636 True 1611 mRNA 0.50 5 53733714 53800047

Neighbor

gene id symbol gene type direction distance location
XLOC_011104 NA coding downstream 34271 53686314 ~ 53699443 (-)
XLOC_011103 NA coding downstream 78175 53650902 ~ 53655539 (-)
XLOC_011102 NA coding downstream 83719 53640246 ~ 53649995 (-)
XLOC_011101 CR759845.1 coding downstream 96592 53585707 ~ 53637122 (-)
XLOC_011100 NA coding downstream 252320 53474458 ~ 53481394 (-)
XLOC_011106 NA coding upstream 66247 53866294 ~ 53867992 (-)
XLOC_011107 NA coding upstream 111860 53911907 ~ 53979683 (-)
XLOC_011108 fzd1 coding upstream 117368 53917415 ~ 53919115 (-)
XLOC_011109 cdk14 coding upstream 219409 54019456 ~ 54078662 (-)
XLOC_011110 LO017872.1 coding upstream 366885 54166932 ~ 54187486 (-)
XLOC_010626 CR392024.2 misc downstream 32838539 20895112 ~ 20895175 (-)
XLOC_011111 NA non-coding upstream 491615 54291662 ~ 54296444 (-)
XLOC_011114 NA non-coding upstream 636929 54436976 ~ 54439156 (-)
XLOC_011118 NA non-coding upstream 726362 54526409 ~ 54532090 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_02403053_02403317 ZNRF2 coding CI01000086 null 2402872 ~ 2403317 (-)