XLOC_011106


Basic Information

Item Value
gene id XLOC_011106
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53866294 ~ 53867992 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021850
atgtcgctcttggctagttttaacagcgacggcactgtaggctagttttcaaacagcagacggtgctctaggctagttttaacagtagatggcgctctaggctagtgtttaacagcagatggcgctctaggctagtttttaacagcagatggcgctctaggctagtttttaacagcagatggcactctaggctagtgtttaacagcagatggcactctaggctagtttttaacagcagatggccctctaggcaagtgtttaacagcagatggcgctctaggctagtttttaacagcagatggcgctctaggctagtgtttaacagtagacggtgctctaggctagtgtttaacagcagagggcgctctaggctagtgtttaacagcagacggcactctaggctagtgtttaacagcagagggcgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagacggcgctctaggctagtgtttagcagatgacgctctaggctagtgtttaacagcagatagcgctctaggctagtgttaaacagcagacagcgctctaggctagtgtttaacagctgaCATCGCTCTAGGCTCGTTTTTAAACAGCTGacatcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagctgacggcgctctgggctagtgtttaacagcagatgttgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagcagatgttgctctaggctagtgtttaacagcagatgttgctctaggctagtgtttaacagcagatgatgttgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagcagatgtcgctctaggctagtgtttaacagctgaCATCGCTCTAGGCTCGTTTTTAAACAGCTGACatagctctaggctagtgtttaacagcagacggcgctctaggctagtgtttaacagcagacggcgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagatggcgctctaggcttttAATTGctaattttaacagcagatggcgctctaggctagttttcgaCAGCAGACATTGCTcaaggctagtgtttaacagcagacggcccTCTAGGCTAGT

Function

GO:

id name namespace
GO:0045475 locomotor rhythm biological_process
GO:0048512 circadian behavior biological_process
GO:0007622 rhythmic behavior biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021850 True 1257 lncRNA 0.48 2 53866294 53867992

Neighbor

gene id symbol gene type direction distance location
XLOC_011105 znrf2b coding downstream 66247 53733714 ~ 53800047 (-)
XLOC_011104 NA coding downstream 166851 53686314 ~ 53699443 (-)
XLOC_011103 NA coding downstream 210755 53650902 ~ 53655539 (-)
XLOC_011102 NA coding downstream 216299 53640246 ~ 53649995 (-)
XLOC_011101 CR759845.1 coding downstream 229172 53585707 ~ 53637122 (-)
XLOC_011107 NA coding upstream 43915 53911907 ~ 53979683 (-)
XLOC_011108 fzd1 coding upstream 49423 53917415 ~ 53919115 (-)
XLOC_011109 cdk14 coding upstream 151464 54019456 ~ 54078662 (-)
XLOC_011110 LO017872.1 coding upstream 298940 54166932 ~ 54187486 (-)
XLOC_011111 NA coding upstream 423670 54291662 ~ 54296444 (-)
XLOC_010626 CR392024.2 misc downstream 32971119 20895112 ~ 20895175 (-)
XLOC_011100 NA non-coding downstream 384900 53474458 ~ 53481394 (-)
XLOC_011114 NA non-coding upstream 568984 54436976 ~ 54439156 (-)
XLOC_011118 NA non-coding upstream 658417 54526409 ~ 54532090 (-)
XLOC_011119 NA non-coding upstream 726918 54594910 ~ 54597421 (-)

Expression


Co-expression Network