Item | Value |
---|---|
gene id | XLOC_011107 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 53911907 ~ 53979683 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0007507 | heart development | biological_process |
GO:0006936 | muscle contraction | biological_process |
GO:0097435 | supramolecular fiber organization | biological_process |
GO:0071691 | cardiac muscle thin filament assembly | biological_process |
GO:0003012 | muscle system process | biological_process |
GO:0030029 | actin filament-based process | biological_process |
GO:0030036 | actin cytoskeleton organization | biological_process |
GO:0061061 | muscle structure development | biological_process |
GO:0060537 | muscle tissue development | biological_process |
GO:0030042 | actin filament depolymerization | biological_process |
GO:0060538 | skeletal muscle organ development | biological_process |
GO:0014706 | striated muscle tissue development | biological_process |
GO:0099080 | supramolecular complex | cellular_component |
GO:0099081 | supramolecular polymer | cellular_component |
GO:0044420 | obsolete extracellular matrix component | cellular_component |
GO:0043292 | contractile fiber | cellular_component |
GO:0044449 | obsolete contractile fiber part | cellular_component |
GO:0098643 | banded collagen fibril | cellular_component |
GO:0098644 | complex of collagen trimers | cellular_component |
GO:0005581 | collagen trimer | cellular_component |
GO:0005583 | fibrillar collagen trimer | cellular_component |
GO:0015629 | actin cytoskeleton | cellular_component |
GO:0032991 | protein-containing complex | cellular_component |
GO:0099512 | supramolecular fiber | cellular_component |
GO:0031674 | I band | cellular_component |
GO:0030016 | myofibril | cellular_component |
GO:0030017 | sarcomere | cellular_component |
GO:0030018 | Z disc | cellular_component |
GO:0005201 | extracellular matrix structural constituent | molecular_function |
GO:0051015 | actin filament binding | molecular_function |
GO:0003779 | actin binding | molecular_function |
GO:0044877 | protein-containing complex binding | molecular_function |
GO:0008092 | cytoskeletal protein binding | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00022290 | False | 2435 | lncRNA | 0.37 | 3 | 53911907 | 53979683 |
TCONS_00022291 | False | 2837 | lncRNA | 0.35 | 1 | 53922184 | 53925020 |
TCONS_00022292 | False | 2831 | lncRNA | 0.37 | 3 | 53922184 | 53979683 |
TCONS_00022293 | True | 2284 | lncRNA | 0.38 | 2 | 53925828 | 53979683 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_011106 | NA | coding | downstream | 43915 | 53866294 ~ 53867992 (-) |
XLOC_011105 | znrf2b | coding | downstream | 111860 | 53733714 ~ 53800047 (-) |
XLOC_011104 | NA | coding | downstream | 212464 | 53686314 ~ 53699443 (-) |
XLOC_011103 | NA | coding | downstream | 256368 | 53650902 ~ 53655539 (-) |
XLOC_011102 | NA | coding | downstream | 261912 | 53640246 ~ 53649995 (-) |
XLOC_011109 | cdk14 | coding | upstream | 39773 | 54019456 ~ 54078662 (-) |
XLOC_011110 | LO017872.1 | coding | upstream | 187249 | 54166932 ~ 54187486 (-) |
XLOC_011111 | NA | coding | upstream | 311979 | 54291662 ~ 54296444 (-) |
XLOC_011112 | CABZ01111454.1 | coding | upstream | 376159 | 54355842 ~ 54357200 (-) |
XLOC_011113 | osr2 | coding | upstream | 422627 | 54402310 ~ 54405976 (-) |
XLOC_010626 | CR392024.2 | misc | downstream | 33016732 | 20895112 ~ 20895175 (-) |
XLOC_011101 | CR759845.1 | non-coding | downstream | 274785 | 53585707 ~ 53637122 (-) |
XLOC_011114 | NA | non-coding | upstream | 457293 | 54436976 ~ 54439156 (-) |
XLOC_011118 | NA | non-coding | upstream | 546726 | 54526409 ~ 54532090 (-) |
XLOC_011119 | NA | non-coding | upstream | 615227 | 54594910 ~ 54597421 (-) |
XLOC_011121 | NA | non-coding | upstream | 782214 | 54761897 ~ 54767193 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | G299609 | NA | non-coding | CI01000086 | null | 2547583 ~ 2606396 (-) |