XLOC_011108 (fzd1)


Basic Information

Item Value
gene id XLOC_011108
gene name fzd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53917415 ~ 53919115 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021637
TGGCCGACTGGAGACTCTTTCTCACCGCACACCGAAAGTatggccgcgcgcgcgctcttcCTGATCGCCCTCGGAGCTCTGAGCGCCCGCGCGCAGTACGGAGACCGCGGAATGTCGGTGCCCGAGCATGGCTTCTGCCAGCCCATCTCCATCCCTCTGTGCACGGACATCGCCTACAACGAGACCATCATGCCCAACCTGCTCGGCCACACCAACCAGGAGGACGCGGGACTGGAAGTGCACCAGTTTTACCCGCTGGTGAAAGTGCAGTGCTCGCCGGACCTCAAGTTCTTCCTGTGCTCCATGTACGCGCCGGTGTGCACGGTGCTGGAGCAGGCGCTGCCGCCGTGCCGGTCCCTCTGCGAGCGCGCGCGTCAGGGCTGCGAGGCGCTGATGAATAAATTCGGCTTCCAGTGGCCGGAGAGCCTGGCGTGCGAGTCCTTCCCGGTGCACGGCGGAGAGCTCTGCGTGGGACAGAACACCACCGGGCCGAGCCCCCCAGTCAGCCCGACTCCCGACGCGACGCAGGCGCCTCCGGAGCCCTCCCAGCGCGGCCGCTTCCAGTGCCCGCCGTCGCTCAGAGTCCCCCCGTACCTCAACTACCGCTTCATGGGAGAGGACAACTGCGGAGCGCCCTGCGAGCCCAGAAAACTGCACGGCATGATGTACTTCAGCGAGGACGAGCAGAAGTTTGCGCGCATCTGGATCGGGATCTGGTCCGTCCTATGCTGCGCTTCAACTTTATTCACAGTTCTGACTTATCTGGTGGACATGAAGCGCTTCAGCTACCCGGAGAGACCCATCATATTCCTGTCCGGCTGCTACACCATGGTGTCCATCGCCTACATCGCCGGATTTCTCCTGGAGGACAAGGTTGTCTGCAACGAGCAGTTCGAGAACGAGTTCAGGACTGTGGTTCAGGGCACCAAGAAGGAAGGCTGCACCATATTGTTCATGATGCTGTACTTCTTCAGCATGTCCAGCTCCATCTGGTGGGTGATCCTGGCGCTCACCTGGTTCCTGGCGGCCGGGATGAAATGGGGTCACGAGGCCATCGAGGCCAACTCGCAGTACTTCCACCTCGCGGCCTGGGCAGTGCCCGCCATCAAAACCATCACCATCCTGGCTGTGGGTCAGGTGGACGGGGACGTGCTCAGCGGGGTGTGCTTTGTGGGCATCAACAGCGTGGACGCGCTGCGCGGATTCGTGCTCGCGCCGCTCTTCGTGTACCTGTTCATCGGCACCTCGTTCCTCCTGGCGGGATTCGTGTCGTTGTTCCGCATCAGGACCATCATGAAGCACGACGGCACTAAAACGGAGAAGCTGGAGAAGCTGATGGTGCGGATCGGGATCTTCAGCGTGCTCTACACGGTTCCGGCCACCATCGTGATCGCCTGTTACTTCTACGAGCAGGCCTTCCGCGCGCACTGGGAGCAGACGTGGAGCGCGCACTCGTGCAAGACATACGCGGTGCCGTGTCCCGCGCACAACCCGCAGATGAACCCGGACTTCACGGTGTTCATGATCAAGTACCTGATGACCCTGATCGTGGGCATCACCTCCGGCTTCTGGATATGGTCTGGAAAGACGCTCAATTCCTGGAGGAAGTTTTACACGAGACTGGCGAACAGCAAACAGGGAGAAACCACAGTGTGAAGCTCTGCtttcattattattactgctCACCACTTCACCTGAGTG

Function

symbol description
fzd1 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human FZD1 (frizzled class receptor 1).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-219 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human FZD1 (frizzled class receptor 1).

Ensembl:

ensembl_id ENSDARG00000106062

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021637 True 1701 mRNA 0.61 1 53917415 53919115

Neighbor

gene id symbol gene type direction distance location
XLOC_011106 NA coding downstream 49423 53866294 ~ 53867992 (-)
XLOC_011105 znrf2b coding downstream 117368 53733714 ~ 53800047 (-)
XLOC_011104 NA coding downstream 217972 53686314 ~ 53699443 (-)
XLOC_011103 NA coding downstream 261876 53650902 ~ 53655539 (-)
XLOC_011102 NA coding downstream 267420 53640246 ~ 53649995 (-)
XLOC_011109 cdk14 coding upstream 100341 54019456 ~ 54078662 (-)
XLOC_011110 LO017872.1 coding upstream 247817 54166932 ~ 54187486 (-)
XLOC_011111 NA coding upstream 372547 54291662 ~ 54296444 (-)
XLOC_011112 CABZ01111454.1 coding upstream 436727 54355842 ~ 54357200 (-)
XLOC_011113 osr2 coding upstream 483195 54402310 ~ 54405976 (-)
XLOC_010626 CR392024.2 misc downstream 33022240 20895112 ~ 20895175 (-)
XLOC_011101 CR759845.1 non-coding downstream 280293 53585707 ~ 53637122 (-)
XLOC_011114 NA non-coding upstream 517861 54436976 ~ 54439156 (-)
XLOC_011118 NA non-coding upstream 607294 54526409 ~ 54532090 (-)
XLOC_011119 NA non-coding upstream 675795 54594910 ~ 54597421 (-)
XLOC_011121 NA non-coding upstream 842782 54761897 ~ 54767193 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_02543856_02545475 FZD1, FZD1.L coding CI01000086 null 2542368 ~ 2545808 (-)
eurasian perch (Perca fluviatilis) G71042 fzd1,LOC104958298,LOC104925482 non-coding NC_053118.1 CM020915.1 7295976 ~ 7300306 (-)
bowfin (Amia calva) AMCG00021512 fzd1,LOC106605515,LOC105910048,LOC107565291 coding CM030130.1 CM030130.1 20112413 ~ 20114095 (+)