XLOC_011114


Basic Information

Item Value
gene id XLOC_011114
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54436976 ~ 54439156 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022300
gatctagactttaccagtCCAGTGTCCTCCACATCTCCTCCACATCTCCTCCttctgttgtgttctgatgtgttttctgactgttgtagctgtgaaataactctaatcattcagcggagtgatcTGGAGCTGTGATGTGCTCTAAACCTGCCAGAACTACTTTAGCTGACATTAACCAAACACCTGGGAgtgaccatcagccaatcagaatgcagCACTGATATGAGGTGTTATGACCAATAAAGTAGGCATCACTGCAGCCTGGAGaactccaagtgggagggacttgcACCATAAGTGGGCGGGGTTTAGAGTTAGTGTAGGTGGAGTAGACATTAGTAAAGCACAGCAGGCTGCTGGGAGGTTGAGTTTAAAGTTGATATAGGTGCAGACACtcataaaacacaaataagacataaataaataaaaactccagatttgtacagcccacttggagcttaagtcccacccacttggagctggctccACCCTCTGTTGATACTCTTTTCAGTGAATCTGTTGTGTTTCAGAATGACACGTGGGGTGTCCAGTACTCGTACGCGCTCTTCAAGGCCATGAGCCACATGCTGTGCATCGGGTACGGCGCTCAGGCTCCGGAGGGGATGACGGACGTGTGGCTCACGATGCTCAGCATGATCGTAGGAGCCACGTGTTACGCCATGTTCATCGGCCACGCCACAGCGCTCATCCAGTCGCTCGACTCCTCTCGCAGACAGTACCAGGAGAAGGTAAAACACGACACAGCCATCTGCAGGACTGATTAAAGTGCTCTGAAATAGCATTtataatgtttgatgtaatctcaacagAAACAGGGAGAGACATTGAGTAGTTCTGCctctttaaaaacagccaatggcATGTTGTTTTTCTCACCGCTCTGCCAGTAAAAGTAGTTGTGCTCAAGCGCATCAGAAGAACAGCCAATaagaagaagggggcggggcatgtcagacactagtgAGCCTTCGATTGGTCAggagatttgatgagaaactgaagtatgaggagacGACAGAAACAGTCATTGATTTAGGTGAAAGAGACAAACTGCGAACTGCAGATCAGGTTTATATTTAGATGTTGTGGAGATGCTAAGATATCCTAAAGACTAACACTGAAACTAACATctgaaaaaaatgtcattttaagtttGCAAAACCTTTATTCTTCATCGTCAGCTGCAACACATACATCATTAGACAGTATAGGTGCACAGCTGCATGCTGGGATATCTGTCATTGTCTTTTGTTCAAGCACACTCACCTGtagatgatgttgttgttgttgttgttgttgtttaaccCGCTCATCTGTGAACCCTGCTTGTGGTCTTCAGGATCAAAAAGGAACGTAGGACTGTAAAGTGCCCTCACATCATTTTCAAATTAATtccaccacaacagatcaattacaattattgttgtgttaccatagcaactgtggaatcaccacaacagattaaataccataattgttgtgttaccaactatagttgttgtgttaccatagcaactgtagaatcaccacaacagatcaattaccataattgttgtgttaccatagcaactgtagaatccccacaacagatcaattaccatAATTGTTGGGTTACCATAGCacctgtagaatcaccacaacagatcaattaccataattgttgtgttaccatagcaactgtagaatcaccacaacagatcaattaccataattgttgtgttaccatagcaactgtagaatcaccacaacagatcaattaccataatttttgtgttaccatagcaactgtggaatcaccacaacagatcacttCAAGTACTTTTACAATAGAATCGATATACAATTTTAGAGTATTTACAACAACTTATAGTATTTTCATGTGCTGATGAGTGCTGGTTAAAATTAGTAATATCTGTCATGCATGATCTGTAAATGTTTACTGAAGAAGAGTCAGACTAACtaacgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtccagtATAAGCAGGTGGAGCAGTACATGTCGTTCCACAAGCTTCCAGCAGACGTCAGGCAGAAAATCCACGAGTATTATGAGCATCGATACCAAGGCAAGATGTTTGATGAGGATAACATTCTGGGAGAGCTGAGCGA

Function

GO:

id name namespace
GO:0032870 cellular response to hormone stimulus biological_process
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0098531 ligand-activated transcription factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022300 True 2181 lncRNA 0.43 1 54436976 54439156

Neighbor

gene id symbol gene type direction distance location
XLOC_011113 osr2 coding downstream 31000 54402310 ~ 54405976 (-)
XLOC_011112 CABZ01111454.1 coding downstream 79776 54355842 ~ 54357200 (-)
XLOC_011111 NA coding downstream 140532 54291662 ~ 54296444 (-)
XLOC_011110 LO017872.1 coding downstream 249490 54166932 ~ 54187486 (-)
XLOC_011109 cdk14 coding downstream 358314 54019456 ~ 54078662 (-)
XLOC_011115 pklr coding upstream 11251 54450407 ~ 54455573 (-)
XLOC_011116 cyp11c1 coding upstream 19979 54459135 ~ 54471235 (-)
XLOC_011117 clk2b coding upstream 35465 54474621 ~ 54498109 (-)
XLOC_011118 NA coding upstream 87253 54526409 ~ 54532090 (-)
XLOC_011119 NA coding upstream 155754 54594910 ~ 54597421 (-)
XLOC_010626 CR392024.2 misc downstream 33541801 20895112 ~ 20895175 (-)
XLOC_011107 NA non-coding downstream 457293 53911907 ~ 53979683 (-)
XLOC_011106 NA non-coding downstream 568984 53866294 ~ 53867992 (-)
XLOC_011104 NA non-coding downstream 737533 53686314 ~ 53699443 (-)
XLOC_011103 NA non-coding downstream 781437 53650902 ~ 53655539 (-)
XLOC_011121 NA non-coding upstream 322741 54761897 ~ 54767193 (-)
XLOC_011128 NA non-coding upstream 559830 54998986 ~ 54999993 (-)
XLOC_011131 NA non-coding upstream 753016 55192172 ~ 55204179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G222334 NA non-coding NC_048567.1 CM023221.2 9563459 ~ 9563687 (+)
bowfin (Amia calva) AMCG00000016 NA coding PESF01000033.1 PESF01000033.1 90854 ~ 99618 (-)