XLOC_011117 (clk2b)


Basic Information

Item Value
gene id XLOC_011117
gene name clk2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54474621 ~ 54498109 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021647
AGTTCGGTTTACGGAGCGGTAAAATAACGGCAGAACGGATTTTCTGTGGGACAAACGCACCGGCGTCGCTGCTCAAGCGatGCCTCACTCTCGGCGGTACCCGTCATCGGAGCGGACCCGCAGCCGGAGCAGGAGCCGTCACATGCGGTATGAGCGGCACCGTCGCAGACGACGCAGCCGAACACGCAGTCGCAGCCGTTCTATATCATCCCGGAGCAGGAGACGCCATCGGGAGAGACGCCACAGAGACAGCAGCTCCAGGAGaTCCAGCTACCAGCAGCCATCCGGCGAGCGCAGGAGGAGCAGCAGACGCTACTGTCGGGACGAGCGGGAGGAGTTTGACCGAGACTACACCTTCACAGACGGATATTTCAGACACACACGCTCTCGAGATCACCGTACAGAGAGAGACAGCGGACGCAGACGGAGACGCCGCAGAACCAGGACCAGAACTCGATCCAGAACACGCTCATACAGCCAGAGCCGGTCCATATCATCAaaAGCGTGGGCGGTTAAAGACGATGAGGAGGGTCATCTGATCTATCGGGCCGGTGATGTGCTGCAGGACAGATACGAGATCACACAGACGCTCGGAGAGGGAACCTTCGGGAAAGTGGTGGAGTGTGTGGATCATCAGAGgggAGGCTCTCGCATCGCTCTAAAGATCATTAAGAATGTGGAGAAATATAAAGAAGCAGCCCGACTGGAGATCAACGTGCTGGAGAAGATCAACCAGAGAGATCCAGAAAACAAGAATCTGTGTGTGCAGATGTTGGACTGGTTCGATTATCACGGCCACATGTGTCTGAGTTTCGAGCTGCTGGGTCTCAGTACCTTCGACTTCATGAAGGAGAATAATTACCTGCCGTACTCCATCAGTCAGGTCAGACACATGGCCTACCAGATCTGCCTCGCTGTCAAGTTTCTCCATGACAACAAGCTGACCCACACTGACCTGAAGCCGGAGAACATCCTGTTTGTGAGCTCAGACTATAGTGTGCTGTACAACGCAGAGAAGaaGCGTGACGAGCGCTCCGTGAACAGCACTGCAGTGAGGATTGTGGATTTCGGCAGCGCCACCTTTGACCACGAGCATCACAGCAGCATCGTCTCCACACGACACTACAGAGCGCCAGAGGTCATTCTGGAGCTGGGCTGGAGTCAGCCGTGTGACGTCTGGAGTATCGGCTGTATACTGTTTGAGTTCTACTGCGGATACACACTCTACcagaCTCATGACAACAGAGAGCATCTGGCCATGATGGAGCGAATACATGGACCTGTTCCTTCCAGAATGATACGTAAAACGAGGAAGCAGAAGTACTTCTACAGAGGTCGTCTGGACTGGGATGAGAGCACGTCAGCGGGCCGATACGTCAGAGAGAACTGCAGGCCGCTGAGGaggtATATGCTGTGTGAGTCGGAGGATCATCATCAGTTCTTTGATTTGCTGGAGGGCTTGTTGGAGTACGAGCCGGAGCAGCGTTTGTCTCTCTCCGCTGCGCTCCGGCATCCCTTCTTCAGTCTCCTCCGAGACACCGAACACTTCAGTGGAGGCCGTGACATTAGCcggtgacctctgacctctgctgCGGTCACTCATGGACAGGTGGGTCAGCCAGTATTGACCTCAGTTATGATGAAGAGAATATTGATGATCGCTCgctgctgattggtggagaacTAACAGCTCCTCACACCGGATTGGTCAGCCTGAGTTTGACGGACAGCTTCAGGGGCGGGACGCCTTACGGTTCTCTCGGGATCATCATGGACTAAAATAGGATTATATTATTGCACATGTGACGGTTCTCCAACGttttcagtatttattttatgACTTCTGTTGTTTTGTATGAGATGAATATCAGTGTGTGTACAGTACATGTTCTAGAATAAACCATGCTTCATATG

Function

symbol description
clk2b Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CLK2 (CDC like kinase 2).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1126 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CLK2 (CDC like kinase 2).

Ensembl:

ensembl_id ENSDARG00000059870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021647 True 1914 mRNA 0.53 13 54474621 54498109

Neighbor

gene id symbol gene type direction distance location
XLOC_011116 cyp11c1 coding downstream 3386 54459135 ~ 54471235 (-)
XLOC_011115 pklr coding downstream 19048 54450407 ~ 54455573 (-)
XLOC_011114 NA coding downstream 35465 54436976 ~ 54439156 (-)
XLOC_011113 osr2 coding downstream 68645 54402310 ~ 54405976 (-)
XLOC_011112 CABZ01111454.1 coding downstream 117421 54355842 ~ 54357200 (-)
XLOC_011118 NA coding upstream 28300 54526409 ~ 54532090 (-)
XLOC_011119 NA coding upstream 96801 54594910 ~ 54597421 (-)
XLOC_011120 spag1b coding upstream 135129 54633238 ~ 54640315 (-)
XLOC_011121 NA coding upstream 263788 54761897 ~ 54767193 (-)
XLOC_011122 khdc4 coding upstream 287155 54785264 ~ 54800202 (-)
XLOC_010626 CR392024.2 misc downstream 33579446 20895112 ~ 20895175 (-)
XLOC_011111 NA non-coding downstream 178177 54291662 ~ 54296444 (-)
XLOC_011107 NA non-coding downstream 494938 53911907 ~ 53979683 (-)
XLOC_011106 NA non-coding downstream 606629 53866294 ~ 53867992 (-)
XLOC_011104 NA non-coding downstream 775178 53686314 ~ 53699443 (-)
XLOC_011128 NA non-coding upstream 500877 54998986 ~ 54999993 (-)
XLOC_011131 NA non-coding upstream 694063 55192172 ~ 55204179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000083_00288507_00301769 CLK2 coding CI01000083 null 288449 ~ 301769 (-)