XLOC_011118


Basic Information

Item Value
gene id XLOC_011118
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54526409 ~ 54532090 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022301
GAAAGAAGCGCATGGTCCTGTCTTGCTTTCGtctcagtgttttcattcattttacagACCTTTAATCAACATGTCTGAAGCGGCTGTCAACATTGGCTGGACCCGACTGCATCAGAAGAGCACATTATACAGTGACGGCGGCGGCAGAAGGTCTTTCCGCATCCATGTGGGAGATTTACCATCAGTCTGAAGATCCACACCTGAGAAACTTGAAGATGCAGAACACAGAAGTCCAGTATGGTGGAGCGATAAACGATATCAACATGATCTACAACACAGGGAGCcaatgtgacacacacacacacacacacatacacaccattaCAATAATATGGCATATTATACTTACTTAACTGTTCATTCATgttctttctctgtgtgtgtctttttACAGGTACATGCATTCAAAATAGCGTCAGTGAATGCACATCACACACATGCAGGTAAACTAGACAAGTTAACCAGAACTTAACACCTGGAACAGACCCAGGAGataaaggccccgtttacactagtgcatttagttttaaaacggcgttttagaatgaaagcgatccgcatccacactagTGTCTCAATAGCAGTTTCTGAACCgctctccgtctacaccaaaacgctgaaaacacacatcacgtgaccacacacacacacacacacacacacacacacacatacacactctcgaGCAAGCACTGCAGCCAGGGGCGTAAATCCCAGGGGGCTTGTATCCGTGGCTTGTATAACCCCCCCACTCAAAATTACTCATCTAGTTAACGTTAGCTTGTTGCTAACGCTAAAGCCGTTTCCtatgcattgtttcatttgtgacgacttggcattatgttaacttaatattaacgaccacaattagcatattgtttagctgtgtatttgctaaatgagcactgcTACACTGTGCACactaaccccactgtatttttgtataatcgGTTTCTATTCTGTTTTAAGTGCCTCA
>TCONS_00022302
CTGCTCCTCTCGGCCGGTCAGCATCACCAGCCCTGGAGAAAGAAGCGCATGGTCCTGTCTTGCTTTCGtctcagtgttttcattcattttacagCGGCTGTCAACATTGGCTGGACCCGACTGCATCAGAAGAGCACATTATACAGTGACGGCGGCGGCAGAAGGTCTTTCCGCATCCATGTGGGAGATTTACCATCAGTCTGAAGATCCACACCTGAGAAACTTGAAGATGCAGAACACAGAAGTCCAGTATGGTGGAGCGATAAACGATATCAACATGATCTACAACACAGGGAGCcaatgtgacacacacacacacacacacatacacaccattaCAATAATATGGCATATTATACTTACTTAACTGTTCATTCATgttctttctctgtgtgtgtctttttACAGGTACATGCATTCAAAATAGCGTCAGTGAATGCACATCACACACATGCAGGTAAACTAGACAAGTTAACCAGAACTTAACACCTGGAACAGACCCAGGAGataaaggccccgtttacactagtgcatttagttttaaaacggcgttttagaatgaaagcgatccgcatccacactagTGTCTCAATAGCAGTTTCTGAACCgctctccgtctacaccaaaacgctgaaaacacacatcacgtgaccacacacacacacacacacacacacacacacacatacacactctcgaGCAAGCACTGCAGCCAGGGGCGTAAATCCCAGGGGGCTTGTATCCGTGGCTTGTATAACCCCCCCACTCAAAATTACTCATCTAGTTAACGTTAGCTTGTTGCTAACGCTAAAGCCGTTTCCtatgcattgtttcatttgtgacgacttggcattatgttaacttaatattaacgaccacaattagcatattgtttagctgtgtatttgctaaatgagcactgcTACACTGTGCACactaaccccactgtatttttgtataatcgGTTTCTATTCTGTTTTAAGTGCCTCA
>TCONS_00022303
GCTGTTTCACCCACCTGTGTGTTTCTCCTCCAGTGTTTGCTCAGCGGTTCACCTGTCCGTGTGTTCTCTCCTGCTCCTCTCGGCCGGTCAGCATCACCAGaaACAGCCCTGGAGAAAGAAGCGCATGGTCCTGTCTTGCTTTCGtctcagtgttttcattcattttacagCGGCTGTCAACATTGGCTGGACCCGACTGCATCAGAAGAGCACATTATACAGTGACGGCGGCGGCAGAAGGTCTTTCCGCATCCATGTGGGAGATTTACCATCAGTCTGAAGATCCACACCTGAGAAACTTGAAGATGCAGAACACAGAAGTCCAGTATGGTGGAGCGATAAACGATATCAACATGATCTACAACACAGGGAGCcaatgtgacacacacacacacacacacatacacaccattaCAATAATATGGCATATTATACTTACTTAACTGTTCATTCATgttctttctctgtgtgtgtctttttACAGGTACATGCATTCAAAATAGCGTCAGTGAATGCACATCACACACATGCAGGTAAACTAGACAAGTTAACCAGAACTTAACACCTGGAACAGACCCAGGAGataaaggccccgtttacactagtgcatttagttttaaaacggcgttttagaatgaaagcgatccgcatccacactagTGTCTCAATAGCAGTTTCTGAACCgctctccgtctacaccaaaacgctgaaaacacacatcacgtgaccacacacacacacacacacacacacacacacacatacacactctcgaGCAAGCACTGCAGCCAGGGGCGTAAATCCCAGGGGGCTTGTATCCGTGGCTTGTATAACCCCCCCACTCAAAATTACTCATCTAGTTAACGTTAGCTTGTTGCTAACGCTAAAGCCGTTTCCtatgcattgtttcatttgtgacgacttggcattatgttaacttaatattaacgaccacaattagcatattgtttagctgtgtatttgctaaatgagcactgcTACACTGTGCACactaaccccactgtatttttgtataatcgGTTTCTATTCTGTTTTAAGTGCCTCA

Function

GO:

id name namespace
GO:0090342 regulation of cell aging biological_process
GO:0048869 cellular developmental process biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022301 False 976 lncRNA 0.43 3 54526409 54528701
TCONS_00022302 False 990 lncRNA 0.44 4 54526409 54532020
TCONS_00022303 True 1066 lncRNA 0.45 4 54526409 54532090

Neighbor

gene id symbol gene type direction distance location
XLOC_011117 clk2b coding downstream 28300 54474621 ~ 54498109 (-)
XLOC_011116 cyp11c1 coding downstream 55174 54459135 ~ 54471235 (-)
XLOC_011115 pklr coding downstream 70836 54450407 ~ 54455573 (-)
XLOC_011114 NA coding downstream 87253 54436976 ~ 54439156 (-)
XLOC_011113 osr2 coding downstream 120433 54402310 ~ 54405976 (-)
XLOC_011119 NA coding upstream 62820 54594910 ~ 54597421 (-)
XLOC_011120 spag1b coding upstream 101148 54633238 ~ 54640315 (-)
XLOC_011121 NA coding upstream 229807 54761897 ~ 54767193 (-)
XLOC_011122 khdc4 coding upstream 253174 54785264 ~ 54800202 (-)
XLOC_011123 zbtb7b coding upstream 272725 54804815 ~ 54810464 (-)
XLOC_010626 CR392024.2 misc downstream 33631234 20895112 ~ 20895175 (-)
XLOC_011111 NA non-coding downstream 229965 54291662 ~ 54296444 (-)
XLOC_011107 NA non-coding downstream 546726 53911907 ~ 53979683 (-)
XLOC_011106 NA non-coding downstream 658417 53866294 ~ 53867992 (-)
XLOC_011104 NA non-coding downstream 826966 53686314 ~ 53699443 (-)
XLOC_011128 NA non-coding upstream 466896 54998986 ~ 54999993 (-)
XLOC_011131 NA non-coding upstream 660082 55192172 ~ 55204179 (-)

Expression


Co-expression Network