XLOC_011120 (spag1b)


Basic Information

Item Value
gene id XLOC_011120
gene name spag1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54633238 ~ 54640315 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021648
ATGTCAGgtgtGATGAGTTCCAGCTGTGTGTCAGTTCCAGTGGAGCATCTGGACTACAGCTTCATCCAGAGCTGCTCAGACCTCAAACAGCTGGAGCAGATCCTGAGAGTCCTGCGCTCTGGTCAGGAGGGTGTGTATCCTCATCTGATTGGCTTCTGTGAGCGACGCATCGAGACGCTGAACCCCAAATCTGCAGAGCTGCGGACGGAGAATCACCCACACACAGCGGCCTGTTACACCGAGGAGGAGTGGAGGAGCATCACTGAAGACCtgcagGTGTGGGAGAGGAGTGTGCGGATGACTGAAGCGGCTCTGATGCGCAGCTCTATATTCAGCAGTGAGGAGTGTGTGCCGCCGGTGAGATCCTCACACAGAGTGTTGCAGACAAATCAGGAGAAGAAGAAGACGGTGAAGACCTCCTGCACCCCTCGACCATACACAGACTGGGACAGGTTTGATGTGGACTCTGCGTGCGCAGGTGAGAGTGTGAGAAATGCTcccgctgctgctgctgtgtgTCCAGAGGTCCAGCAGAGGCTCAGCAGCTGCACAGCTCTGACAGCGCAGGAGAAGCAGACTGCAGCTCTCCGAGAGAAAGACAAGGGCAATGAAGCGTACAGGAGCCGCGACTATGAGGAGGCGCTGGACTACTACtgcaggAGTCTCTCTCTGGCCTCTTCAGCTGCTGTGTTTAATAACCGCGCTCAGACTCTCATCCGTCTGCAGCAGTGGCCCGCCGCTCTCAGTGACTGTGACGCCGTCCTCCAACTCGAGCCACACAACATCAAGGGTGAgcaacagcagtgtgtgtcacacacacacacacacacacacacacacacacacattgacattGACTTCTGTGTGAGCATCGtgtgacctctgacctccagAAGCTCCTGGCGGATGTGAGCAGCACAGATCCACCTCAGCAGACACGCAGAACAGGAAGGAGAATCCTGATACAGGAAgtggaggaagaggaagaagGTGCTCACAGTGAACACAGCGGAGAGAGCCGAGGCATCATGGGAAATAcacacagcagcagcagcgcaGGCGGAGCTGCACATGGAGACGCCCACACAGAGGATACACCCTCGGGACACACCCACACTGAGGACACACCCCTGGGACACACCCATGATGAGGACACACCCCCTGGGCATATCCAGACAGAGGACACACCCCAAGGACACACCCACATTGAGGACACATCCTCTGGACAGATGGAGGTCACACCCCCTGGGCACATCCACAATGAAGCCACTCCCCCCGGGCACACCCCCACTAATGTTACACCTCCTGGGCACACCCACATGATGGATGAGGAACACAAAGAGACTGCAGAGCAACACACACAGAGTCTTCAGCTGGACACACACACCTGCGCAGCGTACACCAACAGagcgcTCTGCTACATCAAACTCGAGCGCTTCACTGAAGCCCAGCAGGACTGTGACTCCGCCCTTCAGATCGAACCCACCAATAAGAAGGCTTTCTACAGACGAGCACTGGCCAATAAGGGTCTGAAGgattaCCTGTCGTGTCGTTCAGACCTGCAGCAGGTGTTGCGTCTGGATGCGAGTGTGACGGAGGCGCAGCGGCTGCTGATGGAGCTCACACACCTGATGGAGGACAGGAGACGCATGACTGTACACATCactgaggtggaggatgaagatgatgaaggtgTGGTCAGCGGTGCAGATTGA

Function

symbol description
spag1b Predicted to be involved in axonemal dynein complex assembly. Predicted to be active in cytosol. Is expressed in female organism. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 28. Orthologous to human SPAG1 (sperm associated antigen 1).

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-512 Predicted to be involved in axonemal dynein complex assembly. Predicted to be active in cytosol. Is expressed in female organism. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 28. Orthologous to human SPAG1 (sperm associated antigen 1).

Ensembl:

ensembl_id ENSDARG00000069499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021648 True 1715 mRNA 0.56 14 54633238 54640315

Neighbor

gene id symbol gene type direction distance location
XLOC_011119 NA coding downstream 35817 54594910 ~ 54597421 (-)
XLOC_011118 NA coding downstream 101148 54526409 ~ 54532090 (-)
XLOC_011117 clk2b coding downstream 135129 54474621 ~ 54498109 (-)
XLOC_011116 cyp11c1 coding downstream 162003 54459135 ~ 54471235 (-)
XLOC_011115 pklr coding downstream 177665 54450407 ~ 54455573 (-)
XLOC_011121 NA coding upstream 121582 54761897 ~ 54767193 (-)
XLOC_011122 khdc4 coding upstream 144949 54785264 ~ 54800202 (-)
XLOC_011123 zbtb7b coding upstream 164500 54804815 ~ 54810464 (-)
XLOC_011124 kdf1a coding upstream 250520 54890835 ~ 54919260 (-)
XLOC_011125 tpbgl coding upstream 285122 54925437 ~ 54928813 (-)
XLOC_010626 CR392024.2 misc downstream 33738063 20895112 ~ 20895175 (-)
XLOC_011114 NA non-coding downstream 194082 54436976 ~ 54439156 (-)
XLOC_011111 NA non-coding downstream 336794 54291662 ~ 54296444 (-)
XLOC_011107 NA non-coding downstream 653555 53911907 ~ 53979683 (-)
XLOC_011128 NA non-coding upstream 358671 54998986 ~ 54999993 (-)
XLOC_011131 NA non-coding upstream 551857 55192172 ~ 55204179 (-)

Expression


Co-expression Network