XLOC_011127 (wdtc1)


Basic Information

Item Value
gene id XLOC_011127
gene name wdtc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54947768 ~ 54978981 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021661
TTTGGAGCTCTGGATCTGCGTAGATAAAGGCCAGACTCCCAGGATCTCGGCCTCTGCGAgaggcttttttatttttgcgCAGATGTTTGCAGATGTTTGGCACTTAAATGCAGAGCGCTGATTGGACGCTCCATGACGTGCTGTGAGACCATGACACTGAGGAACATCACTGGGGATCTCCTGCACCGGCAGATCAGGgagaacAGAGCGCTGGACTTCCAGAGGCACTATCATGTCACTGACCCGTTCATCAAGCGTTTGGGGCTGGAGGCCGAACTACAGGGTCACTCAGGCTGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGATCTGTTGGCGTCGGGTTCAGACGATCAGCACGCCATCATCTGGGATCCTTTCAGACACAGTAAACTGATCACTATGCACACGGGACACGCCGCTAACATCTTCTCCGTCAAGtTCCTCCCGCACTCTGACGACCGGATCTTGATCACAGGAGCTGCAGACACTAAAGTGCACGTTCACGACGTGACGGCGAAGGAGACGATCCACATGTTCTCTGATCACACCAACAGAGTGAAGCGCATCGCTACTGCCCCCATGTGGCCAAATACCTTCTGGAGCGCCGCCGAGGACGGACTCATCAGgCAGTATGATCTGAGAGAGAGCAGCAAGCGCTCTGATGTTCTGATCGATCTGACAGAGTATTGTGGTCAGCTCGTCGAGGCCAAATGTCTGGCCGTGAACCCTCGAGACAACAATTACCTTGCGGTTGGAGCCAACGGGCCCTTCGTGCGGCTCTACGACATCAGGATGATCCACAATCACAGGAAGTCTCTGAGTCAGAGTTCGTCAGCAGGCGTTCACACGTTTTGCGATAAGCGAAAGTCAATACCGGATGGCGCTGGACAGTATTATGTTGCAGGTCATTTACCTGTGAAGCTTCCGGACTATAATAACAGGTTGCGAGTTCTAGTGGCGACTTACGTTACGTTCAGTCCTGACGGCACCGAGCTGCTGGTCAACATGGGTGGAGAACAAGTGTATTTATTCGACCTGACGTTTAAGCAGAGGCCGTACACTTTTCTGCTGCCCAAAAAGTGCCATTCGTCAACAGACGTACAGAACGGGAAAACCACTAATGGTGTGTCCAATGGGATTCATCTGCCAGCCAGCCGCCTTAAACTGGCCAAAGTCTCCAGCAGTGGCTCTGGTGATCTCCCTCTTCATCTGGAGAGGATAAAGCAGCGAGCGAACGATGCGTTTGCACGTCAGCAGTGGACTCAAGCCATTCAGCTCTACAGTCTGGGCATCCATGAGGCCGGACCCAACGCCATGCTGTACGGAAACCGTGCTGCTGCATACATGAAGCGCAAGTGGGATGGAGATCACTACGATGCGCTGCGGGACTGTCTGAAGGCCTTGTCTCTAAACCCGGGCCACCTGAAGGCTCATTTCCGTTTAGCGCGCTGCCTCTTTGAGCTGAAGTACGTGGCTGAGGCTCTGGAGTGTCTCAATGACTTCAAGGGCAAGTTCCCTGAGCAGGCGCACAGCAGTGCTTGTGACGCCCTCGACAAAGACATCAAGGCAGCGCTCTTCTCCAAAACAGACGCCTCGGATGACAAGAAGGGGAACAGCTCAATCCGCTTCCATAATTTCAGCCGGAAGGAGTCGATCCCGGAGGATGAGATCGTCCTCAGAGAGCGAAGTTTTGACTATAAGCATCGCTACTGCGGACACTGCAATACCACCACCGACATTAAGGAGGCAAACTTCTTTGGGAGTAAAGGCCAGTACATTGTGAGCGGTTCAGACGACGGCTCGTTTTTCATCTGGGAGAAAGAGACGACGAATCTGGTGCGGATCTTACAGGGAGACGAGTCTATAGTGAACTGCCTGCAGCCGCATCCCGGACACTGTTTCCTGGCCACCAGCGGCATCGACCCCGTGGTGCGGCTCTGGAGCCCCAGACCCGAGTGTGAGAATGAGAACGGCCGTGTGGTGGAGGACATGGAGGGCGCAGCGCAGGCTAACCAGCGGCGCATGAACGCAGACCCCCTGGAGGTGATGCTGCTGAACATGGGCTACAGAATCAGCGGTCTGAGCAGCCGCGGGGCCGAGGGGTCGGATGAAGAGGACAGCTCCGAGGGTCAGGTCCAGTGCCGCtccagctgaacacacacacacacacacacatttactgcgCAATCCAGCTCGCGACGCCGCACGAACCAATGCTGCCGCTCCGCACTATGCAGAAGTCTGGAGAAGTGTGTTTTCCCCCTCGCACAATACAGCACATGCACCTGCGGATCACTATCTGCAACAAAACACAAGCATCAGTGAAGCGTAGCGCTCGATTGACTGCTGTTTAACGATtaatcctgactgattgcatgcaaaataaacacatttgcaTTTACATAATATGCACAgaatgttattatatatatatataaatgcacacatctatatatattaaatttgtatataaattatatgaacattaatatatatgtaaatatctttcatatatatgtgtgcgcatttatatatgcataataaatatacacccTTTACACAAAttgttttgtgtgtatatataaaaacacacatccatgtatacatgtatagaaaatgtacttatatataaaatatttgtatataacaATGCGCATAATGTATATAcatatttgtgtgtgcatttatacGTACACAAAATCCTGCATATATAAATTCACACAtccatgtgtatatatgtacagaaatagttcatatataaatatatttgtgtataagagattatatgtaaatatatttaggtatatacgtgcatgtgtgtgcgcatatATACATACAGAGCACATGTATTATGTAGGTAAAAGAGTGTATTTGCACATAATTAGTCCTGATTAATGGTTAAACAGCACTGCGCATTTCCAAAAGTCACAAAGTGCTTGGTTGTCTCTAAAGCGAGGCTTGTTATATCGGACGCTGTTGGACGTGATTTCCTTTCTTTTCTGAGGACGGGAAACTGAGTGTTCTTGTTCATCAAAGTATGTTTATAGGTCTGCAGCACTTTCTTTTGGACAAATAAACTGTTTCTGTTCGACTCTGACTTGCATTTTTATTCTGAAAATGGTGATGTTCACTGTCAGATGCTTTTGGAGGGATTTTATGATTATAGTTATTAATTTTGACCTTCTTCATCGGCACAAGCAGGACGTCTGTGTGTTTCTCTCACCTTCACCGATGAACCCGAGAAGAGACGGTAAACCAGATTATTGTAGAGCGTATATCAGATTATAAAAGGCAACAGAATCGGGTCTATTTTGGGattatatgtgtgtttttgtttcacTGTTTCCTTTTGAGTACCATTTAGTGCAGCATTTACATACATATTTGCGATTGAAAGTTCAGCGGCAGCTGATCATTGATCATTGCCGATGTGTTTTCAGTTTCGTCATCGACCGCATGGCTTTATATAGTCATAATCGCTCGCATTACTGGACAAACACACTGCACAGCTTCTCCAGACGCTTTCTTTTCCTCGTCTGtctcaaataaaattaatttatttacaaa
>TCONS_00021662
GGCCGCCGTTGAGACTCTCGCGAGTACGCGGCTCTGAACAGCTACCGTCACCGAGGATCATCGTGATTATTCCGGTCAAGAAGTGAGAGAAAAACACGTCCCAGATGAGGATCTCGGCCTCTGCGAgaggcttttttatttttgcgCAGATGTTTGCAGATGTTTGGCACTTAAATGCAGAGCGCTGATTGGACGCTCCATGACGTGCTGTGAGACCATGACACTGAGGAACATCACTGGGGATCTCCTGCACCGGCAGATCAGGgagaacAGAGCGCTGGACTTCCAGAGGCACTATCATGTCACTGACCCGTTCATCAAGCGTTTGGGGCTGGAGGCCGAACTACAGGGTCACTCAGGCTGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGATCTGTTGGCGTCGGGTTCAGACGATCAGCACGCCATCATCTGGGATCCTTTCAGACACAGTAAACTG

Function

symbol description
wdtc1 Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human WDTC1 (WD and tetratricopeptide repeats 1).

GO:

id name namespace
GO:0045717 negative regulation of fatty acid biosynthetic process biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-3224 Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human WDTC1 (WD and tetratricopeptide repeats 1).

Ensembl:

ensembl_id ENSDARG00000059760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021661 False 3570 mRNA 0.47 16 54947768 54971277
TCONS_00021662 True 463 mRNA 0.53 5 54964737 54978981

Neighbor

gene id symbol gene type direction distance location
XLOC_011126 tmem222a coding downstream 5234 54930747 ~ 54942534 (-)
XLOC_011125 tpbgl coding downstream 18955 54925437 ~ 54928813 (-)
XLOC_011124 kdf1a coding downstream 28508 54890835 ~ 54919260 (-)
XLOC_011123 zbtb7b coding downstream 137304 54804815 ~ 54810464 (-)
XLOC_011122 khdc4 coding downstream 147566 54785264 ~ 54800202 (-)
XLOC_011128 NA coding upstream 20005 54998986 ~ 54999993 (-)
XLOC_011129 zgc:114181 coding upstream 24140 55003121 ~ 55028791 (-)
XLOC_011130 cmc1 coding upstream 126564 55105545 ~ 55122776 (-)
XLOC_011131 NA coding upstream 213191 55192172 ~ 55204179 (-)
XLOC_011132 iqgap3 coding upstream 229417 55208398 ~ 55259199 (-)
XLOC_010626 CR392024.2 misc downstream 34052593 20895112 ~ 20895175 (-)
XLOC_011121 NA non-coding downstream 180575 54761897 ~ 54767193 (-)
XLOC_011119 NA non-coding downstream 350347 54594910 ~ 54597421 (-)
XLOC_011118 NA non-coding downstream 415678 54526409 ~ 54532090 (-)
XLOC_011114 NA non-coding downstream 508612 54436976 ~ 54439156 (-)
XLOC_011111 NA non-coding downstream 651324 54291662 ~ 54296444 (-)

Expression


Co-expression Network