XLOC_011135 (si:ch1073-209e23.1)


Basic Information

Item Value
gene id XLOC_011135
gene name si:ch1073-209e23.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 58211 ~ 71073 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022308
TAGGTAATGAAAActgattgtaaagtgtgactgtgTTGTTACTTTATAACTTCTTACACTCAACATTGATCTCGCTGCTGTCTGTAAGGAATAACTGAGATGTTATTGATTCATTCTGCTCTTCCTCTCAGTATAatgtgctgtttgtgttttatCCGCAGCTCAGGCTGAGTACACGTCTGAAGACGAGCGTCTGCAAGCGGCTCAGAAAAGTTTCCAGCAGATGGTGACTTACTTTGGGCTCAAACCCAAGTCTGGAGAGAAGGAGGTTTCTCCGAACTACATCTTCATGCTGTGGTACGAGTTCTGCAGCGATTTCAAGAACACGTGGAACCGAGAGAGTAAAAACATCTCCAAAGAGAGgCTAAAAGAAGCTCAGCAAACCGTCCAAAAAATCACTGCGGAGAAGAAAGTGGAGACGAAAAAGATCAACGCAAACAGCCTAAAAGAGCGACTGCGAAAGAAAGAAGCGGGAGTTTCGTCCAGCTGAGATGTGGGAGAGGAAGAACAGAAAACACGGAGGATCATCTGACGAGCGCTTTCATCAGAAACACACAGAGGGAGCGTCTGTCAGTGTTTGTGTGAAAAGAGCGTCAGACGGCAGGTAACGCTCACAGCACAGCCAGAAAACACCTTCAGTAGCAGAGAACGTCATATTAAAGCTGTTTTAAAGGTCATTAGGAAACATCCGTATCTAATCAGCAGTGCCTCATACTCATCAGACATGGCCTACGATAAACCCCGCCCACATCAACAAACACTACACTCATTTATAGTCAGAactagtgcttttgaaccatactaatgtgtgtatattatggtattttatggtAACAGATAATTAACgtacatactgtagtattaacttaagtgaactgatgaactgtaataaataatatatgtaatatactttcgtttttactacagtaaactgttgtGTATTGTAGTACAATATACCCTAGAGCTGTAGATAACTACAGTATTgggcatttatttatattacaatagctgttgtgttaccataccaactgtagaatcaccacaacagatctgTTACTATAATTGTATTGCCATAGAAACTGTATAATCACCACTGCAgaccaattactatagttgttgtgttgccatagcaactgtagaatcaccacaacagatcagttactat

Function

symbol description
si:ch1073-209e23.1 Predicted to enable microtubule binding activity. Predicted to act upstream of or within actin nucleation. Predicted to be located in actin filament. Predicted to be active in endoplasmic reticulum membrane and nucleus.

GO:

id name namespace
GO:0045010 actin nucleation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005884 actin filament cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-494 Predicted to enable microtubule binding activity. Predicted to act upstream of or within actin nucleation. Predicted to be located in actin filament. Predicted to be active in endoplasmic reticulum membrane and nucleus.

Ensembl:

ensembl_id ENSDARG00000100805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022308 True 1165 mRNA 0.40 4 58211 71073

Neighbor

gene id symbol gene type direction distance location
XLOC_011134 CABZ01111555.1 coding upstream 16489 40684 ~ 41722 (+)
XLOC_011133 CABZ01111554.1 coding upstream 46414 11682 ~ 11797 (+)
XLOC_011136 CU655844.1 coding downstream 41756 112829 ~ 114621 (+)
XLOC_011137 zgc:77287 coding downstream 61482 132555 ~ 139594 (+)
XLOC_011138 klhdc2 coding downstream 64517 135590 ~ 136937 (+)
XLOC_011139 NA coding downstream 134367 205440 ~ 210652 (+)
XLOC_011140 LO018437.1 coding downstream 194100 265173 ~ 265287 (+)
XLOC_011141 NA non-coding downstream 267056 338129 ~ 374133 (+)
XLOC_011142 BX511111.1 non-coding downstream 305818 376891 ~ 379152 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01047573_00001074_00001919 NA coding CI01047573 null 1074 ~ 1919 (+)