XLOC_011142 (BX511111.1)


Basic Information

Item Value
gene id XLOC_011142
gene name BX511111.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 376891 ~ 379152 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022314
GAAACCGAAACCCCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAAGAGCAAACATGCCTTAAGAAAAGGAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcgATGACATCCTGAAAGCAGCAATACAATTAAGCTGGGCCAGTTCTTCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCATGTGGACTGATGCAGGGTCTCGTTCAGTTCACTACAGGAGAACAGGAGTGGCTAAACTCAGTCTAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGactctaaactctgcaggacaccagctgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAAGATGCTGCTGCATGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcaaacaaaacataaaaaacattcaaaaaacaaTGTCATTTTACTGTACAATGTGTCATTTGATTTCTGTAGAGCTAGTAATAAAATTATCCTACCTCT
>TCONS_00024563
AACCGAAACCCCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAAGAGCAAACATGCCTTAAGAAAAGGAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATGTGAGTATTAAACCAAAGACAGTTCTTTGTGTTAAACTCGTATTTGTTGAGCTACTGTACAGTGCACTGTAGAATTGCTGAGGGTGTAAAGAGGCTTTAAATTATAGTCTATTTTATTTCGCTGTAAATGTTGACTGTGTAATGTTACGGTCTCCAGTCAGCACATATAAAGTAACGTTTCAAAGGTAAAAAAGATTATTATCAAATGTCTGACAGAAAAATGTGAAGTATTGCAGATCACAAGACTAAACAGACATCTGAGTGAGTGATGTATTTGTGCTGATGTAGAATCTGCTGTCAATTGACTGTTgccaatactgtttaaattagatACATGTATTCTTACTAAAAGAGAATAAAGGGTCATTTGTTTAATCTGTGCATCAGTATATAGTTGATCACTTGAGTAAGGTTTGTGTTACATCAGCAACTACACCAACATGTTATTTGAGCATGTGAATCAGAGGTGATTTATTTTAGTCTTTATGTTACAGGGAGGCTTTTATTGAGTACAGTACAGAAactacaaaaacatattttacatttgctatttattattagttattgtattttcaaACAGTGTTTACATTAGCTTTCTGattactggtgtgtgtgtgctttttctgcagagctgaatcgATGACATCCTGAAAGCAGCAATACAATTAAGGTACGTTTTCAttgcttcattttttaaaaccacttaTAGTTGTACAGTTTGATGTTAGTTTAAATATAACTATGTTAGTGATCAGTATTCATACCTAGGATAACAATTCTTGTTTTACGAAAGGTAACTTGGCTTGCTTGCCCTAATGTCATGTTTGCTATTTAGTCTTATCACATAATATGATCAAACTATTTAATtcataagctatatttattttagaaaaatggcAGACCAGGGTGCATCCAATgcattgaggtgaagttggttttatagttgcacattctgactttcttcttaataatttaatttcagaaaaagattttcaaattctatatagggaaatcatattagcagccaatgactatcaaaatacagcactgtccacagtcaaataaatattagttctaatgttgttttgaagtcattcagaccaaatatttaaagtaccatggtaaacaatatagggaccattaaaatgtttaaatgcaaatataaaccATCTTTACCTTAATAACTAACGCTACCATGTTTTATGATTCATTTTACACtccaaaaaatgtatgtttacttAACATTTTTACCAAGAATGTATTGCTAGTAATGATAAATGTGGACAATTAACTAAGTAAATCTACTAGTAGTCACTAGACAATGCATCTTATTTTCTTACATTTCTGTTAAACAATGGAAATTCATACAATATTGaaagtattatcattatttattgaaaacaaacagaaacataattatattattaaaagaatGAATATGAGTAATCATGACAAATAAATACAAGTCACCAACACATGAAACCAAGCTTTATTCTAACAGTGATGTATTACAGACAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTTCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCATGTGGACTGATGCAGGGTCTCGTTCAGTTCACTACAGGAGAACAGGAGTGGCTAAACTCAGTCTAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGactctaaactctgcaggacaccagctgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAAGATGCTGCTGCATGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcaaacaaaacataaaaaacattcaaaaaacaaTGTCATTTTACTGTACAATGTGTCATTTGATTTCTGTAGAGCTAGTAATAAAATTATCCTACCTCT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100491

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022314 False 755 lncRNA 0.45 3 376891 379152
TCONS_00024563 True 2260 lncRNA 0.35 1 376893 379152

Neighbor

gene id symbol gene type direction distance location
XLOC_011141 NA coding upstream 2758 338129 ~ 374133 (+)
XLOC_011140 LO018437.1 coding upstream 111604 265173 ~ 265287 (+)
XLOC_011139 NA coding upstream 166239 205440 ~ 210652 (+)
XLOC_011137 zgc:77287 coding upstream 237297 132555 ~ 139594 (+)
XLOC_011138 klhdc2 coding upstream 239954 135590 ~ 136937 (+)
XLOC_011143 si:rp71-62i8.1 coding downstream 10066 389218 ~ 402380 (+)
XLOC_011144 EMC7 coding downstream 64112 443264 ~ 445920 (+)
XLOC_011145 zgc:194887 coding downstream 71804 450956 ~ 456458 (+)
XLOC_011146 CABZ01064929.1 coding downstream 117459 496611 ~ 496725 (+)
XLOC_011147 C17H14orf28 coding downstream 205217 584369 ~ 589773 (+)
XLOC_011136 CU655844.1 non-coding upstream 262270 112829 ~ 114621 (+)
XLOC_011133 CABZ01111554.1 non-coding upstream 365094 11682 ~ 11797 (+)
XLOC_011148 CABZ01118763.1 non-coding downstream 241409 620561 ~ 620677 (+)
XLOC_011149 CABZ01118767.1 non-coding downstream 255489 634641 ~ 647813 (+)
XLOC_011153 NA non-coding downstream 400108 779260 ~ 807841 (+)
XLOC_011154 CABZ01085623.1 non-coding downstream 424439 803591 ~ 803706 (+)

Expression


Co-expression Network