XLOC_011143 (si:rp71-62i8.1)


Basic Information

Item Value
gene id XLOC_011143
gene name si:rp71-62i8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 389218 ~ 402380 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022315
agctacacacacacacacacacacacacacagagggagtGGCTGGAGCTAAAGGTAGTCAGTGCTGCGTAACTCCCACCTCTCAAACCCTCCCGGAGGAGAAACACAAGCGAAACACTGACGCTGAGCAGGAAGTGCTGCAACTTTCTGGAAGACTTCTGGAGTATTTACAGGAACCACGTATACAGCAGGAGTGTGAGTGTTTGATTTAATGACAGTCAAACTTCGGCTTCTGTGTCTACTCATTCTCAATCTGGAATATAAAGGCTGAACATTGGCACAGGAGTGAACGGAGcgaccgagagagagagagagagagacgctggGATTTATCTTCACACACAAAAAGCTTTTGTGTTCTTGAGTGAAACTGGAGCTCGTGCAGGTTAAACTACTGGAGACtgaagttcacacacacacacacacacacacacacatacacacacaagcaggATTTGTTTATACACTTGCTGGATTccactttaaaggtgcagtatgtcgGTTTCCTAGTGGCTGATCTGGGTATTGCGGTCTAAATTCAAAATACTGGGGAGGGTTTCtttattatttcaattttttataGATTTTCTGATTTGCAGATAACATAGATAAATATCAGATATCGTGGATTAACATAACAACACCAAGTAAATTAACAAATAACATCATATACAGTTAAATGagtgttaaataataaatgcaaatgatTTCAGTTAgtaaacaaaccaaaccaaaacacacagtgaagaaataatattataaccattattattatttttccaataaatcgacgcaggttgccagattgacaacaccaacaggcCACAAGCATGTCTGATGGTTGATCAGCTAATGTTTAAGTTTGTAATATCTGTATTTAATTGCTAATTAAGAAGCAAGCCGTGTGCATTTTTAATAACTCTGGGTTGATTTTCTTATTTGCAAATAATGCAGTTGAATATTAAATACAAGGGATTACATACAAACataacagtaataaataaataaataatatcaatgtGAATTTAAGTAAGATGAATGTAATGGATGTTAGCaaataaaccaaaccaaaactcatacagaaaaaaacaaacaataatattataaCCATCGTCATTATTTTGTCTTTGAGAGCTTTTTTAATTTCACATGATCGCTCTGATATtgacacaggttgccagattgatgacacaaaCAGACAGTTATTCagctaatgtttatgtttgtaacaTTTGTGTTTGTCATACTAATTGTAAGCTAGCTCATGTGTATTTTCATaactgaatctgcgtctcatttggGAGGCTGCTTTTGTCCTAGTGGTTGACCTAGGTATTGCGgtgtaaattcaaaatattggggAGGGTTTTTTCATTAACGATTTGAACTTTTTAACAATACCAAATAAATACCATCatataaatgtatgtgcatattaaataattaatgtaaattatgtttgtaaataaacaaacaaactaaaattcataccaaaaaataattaaattgctaatatcatattattattttgtcccaGAAAGGTTTTTTTCTGACCTGATCACTTTGATGTcgatgcaggttgccagattgatgagaCAAACAGATCACGAGGGTTAATCAGCTAGCTTATGTGTGTAAAATTTGTAATTATTGTACTAATTAAAAAAACAGCTCAAGTGTATTTTTATAAATCTGAATCTGCGTCTGATTTCGGAGGCTGCTTTTGTCCTTCGTCTGCATacattaaactgaaattaaatactcTATCTTCCATAAAGGCAACCtgaagtgctgaaatataattggtttaACTGGTAGTGGGCGGAGTTACAAAGATCAAAGCAAAGACAGACATTCCAAAACGGAACACACATTCTAAAATAGAATAACTGACTGCagaattgtttttaaacaaacaaatatgttcacttaaacatctgcaaacatagACATCACCGATAAATTATATCATATAAATTTATGTAAAACCTTCCTGGTCGCCTAAAatgtttaagctgaatcaaattattcTTATGAGACTATTGAACTtctattatgttaaactgaattaaaactgcttgcataacttatcaaattaagttagaacaggattaatttagtttaataagttacagaGAGCTCAATGCATATGCTGTCTTGTCTAATTGTTCATATTAACTTCTAAatctgattgtaatgcaataatgtgcacatttacacaataattatagccaaaagcactatacaaaacaccttgaattgaattgaatggaatATTGTGGTAgtcatgctttagaagagtcaaaaacgtccatacagcacctttaaaagatTCAATGCAAACCAAAACATGGATCCAGCAAGTAGGATTTCTTCAAGGTTTTCATTGTCGAATCAGCCAACAGCGGTGCTCACTTCATTCCGAACACTCCCAGATGAAAGCACGAACCTCCATCTTGATCCAAATATTGAAGATGATGCAAAACCCGAAGATGAAATGAAGGATAAGCTGCTTCCGGATACAGAAAGGCCTTCATGGAGGTTGTCTGATCCCTATCTAGTGCAGGTCACCAGAGTGGAGACGTACATTGATGACGAGGACATTTCAGAGGAGTCTGGGGGTGAGTGTAAAAAATCCGAGGAGAAGCTGGAGAGTCTTGTGGAGAGATCGCTCAAAGATGCTTCAGTTCTGAGCCGGACGAGTTCGCTCGGGAAACTCAACAAACTCAATGCATCGCGTTTGCTGGATGATGCTAGGAAAGAAACATCAGTGGCAGACGTCAGCAGCTGGAGACGATTCATGACTGTGCGTACAACCAGTACAACACACAGTGATGTTAAAGACGCTGCTGATTCTCACCAAGAAGGGAATTTAGATCCGGCGGATCCTCTAAAAGCAGATGAAGTTGTGAGTTCAGCTTCTTCAGATCATCAGTCGGAGACAGAAGATGTTTCTGCTGGAAATTCACCTGCTGCTAAACGTGCACTGTGTGCACCAGAAGCTCAATCTCCTCCTCAAAAACTGGACACCGTTTCACCCAAAATCGGCGACAAGTTCCAAGTTCCAGCTCTTTTCAGTGGCCTTCGTGTGTTAAAAAAAGGAGCCGTCGGAGACGAGCGGGAGACACTTTCAGAAATTAAACAGAAAGATGCAGATCGAGCGCTACTGAGCCTTAAACAGCACGTCAACAAAGCCAAAACTGAACCGCTCACCATAACCAAGAAGAAAACCGAACCACGAAGTCTATCAGAAATCACTAATTTGCTCCAGAAAGCATCAAACGTTGAGGAAAACAACAAGCAAGAGGAATCTGCGGATATAAAAACAGCAGCTAAAGATGAACAAACAGACTGCAGTGTGAAGCCATCAACAGATTTGGCGTATGATGCATTGAAAAGCAAATTATTTGGATCTAAATCTCCTAAAAAGGACCCTGTGGATGCATCGCTGGATTTGGAGGCgattaagaagaagaagaaaagcgATAAAGAGCTGCTCAGGTCCTTCTTTGAGAAGCAGAACAAAACAAGTGTTGCTGAAACCAAGAGCCCTGCTGAGGTCAAATCTGAAGTCACGTCTCCATCCGATGGCGAAGACCGAACGCCTGGACGTCTGCAGGCTGTCTGGCCTCCACCTAAAGAGGCCGCCGAGGAGAAGGTGGGACTGCGTTACACAGAAGCAGAGCATCAGGCCGCGCTCCTTCAGCTGAAGAGAGAGAGTAAAGAGGAGCTGGAGAAACTGCAGGTGAGTGGAAGAGCTGCAGTACTGACAGGAAACACTAGAGGTCATGAGAGACGCTATAATGCGTG

Function

symbol description
si:rp71-62i8.1 Predicted to enable microtubule binding activity. Predicted to act upstream of or within actin nucleation. Predicted to be located in actin filament. Predicted to be active in endoplasmic reticulum membrane and nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022315 True 3809 mRNA 0.39 4 389218 402380

Neighbor

gene id symbol gene type direction distance location
XLOC_011142 BX511111.1 coding upstream 10066 376891 ~ 379152 (+)
XLOC_011141 NA coding upstream 15085 338129 ~ 374133 (+)
XLOC_011140 LO018437.1 coding upstream 123931 265173 ~ 265287 (+)
XLOC_011139 NA coding upstream 178566 205440 ~ 210652 (+)
XLOC_011137 zgc:77287 coding upstream 249624 132555 ~ 139594 (+)
XLOC_011144 EMC7 coding downstream 40884 443264 ~ 445920 (+)
XLOC_011145 zgc:194887 coding downstream 48576 450956 ~ 456458 (+)
XLOC_011146 CABZ01064929.1 coding downstream 94231 496611 ~ 496725 (+)
XLOC_011147 C17H14orf28 coding downstream 181989 584369 ~ 589773 (+)
XLOC_011148 CABZ01118763.1 coding downstream 218181 620561 ~ 620677 (+)
XLOC_011136 CU655844.1 non-coding upstream 274597 112829 ~ 114621 (+)
XLOC_011149 CABZ01118767.1 non-coding downstream 232261 634641 ~ 647813 (+)
XLOC_011153 NA non-coding downstream 376880 779260 ~ 807841 (+)
XLOC_011154 CABZ01085623.1 non-coding downstream 401211 803591 ~ 803706 (+)

Expression


Co-expression Network