XLOC_011149 (CABZ01118767.1)


Basic Information

Item Value
gene id XLOC_011149
gene name CABZ01118767.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 634641 ~ 647813 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022321
GAGCGCCGCAGCACGTGTCCAAGTCGTGTGGTCTGCGTGAGATGTCAGAGGGTGTGATTGGACGAGGAGTGTTTGGCTCTGCGGTTCTGCCCAGTCGGCCCAGTGTTTCTGCTTCCCCTGAGCAGAGTGACGCGGTCAGCAGAGCAGATCCTCCGTCAGGGGTGTACGGACACGCTTTCTCCAGCAAACACACAGACTCGGACGCCAGTCCTGAACCACAGCAGCTGCAGgaGAAGGTGAAACTGTGTAAGTTTGCGAGTGAGAAGATGCGTCAGCAGCGTGTGGAGCAGCAGGAGCCAATTAAACGCGACGATAcacatgatgaagatgaagacgaTGATGTGAAAGACGTCAACATGAACGGCTGTGAGTCTCCCTCAGATGAATCTCCCTCCAGCCCTAACGGACCAATCAAAAGCATCAGCCCCGCCCATCAGCCCGCCCCTCCGACTGGACCGCCCAATAGAACCACAGTGCCGCGACTCAGACGAGCATCTAGTCTGAACAGAAGCAGACCGGCTGCCACACACAGCTGCGATGAGCTGGTTTCTGGCAGTCCTAAGAAGGAGTCTCAGGATCAGCTGGAGCTGCGGCCGTTCTCTAAACCGGAGCTGGCGCTGACGCAAAGCTTCAGACTGACCGCTGCAGACGACTGGGAGAAGAAGATCGAGGGCATGAACATGCTGCGCAGTCTGGCTCAGTATCATCCTGATGTGCTGATGAGCCGCATTCATGACGTGTGTCTCGCTCTCATTCAGgaggtgcgtAACCTGCGCTCCGGCGTGTCCCGTGTTGCCGTGGTGACCCTGGGCGAGATGTTTGCGTCCCTGCAGAAGGGGATGGATCAGGAGCTGGACGCACCGGTGCGAGCGCTGCTGCATAAAGCTGGAGAATCCAACGGCTTCATCCGCACAGACGTGGAGCGCGCGCTGGACAGCCTGACacaacactgcacacacacacgctgcatACACGCACTGCTGGCCGGAGGACTCGGGTCAggaaacactctctctctctctgtgtgtgtgtgcttacctCCAGTGTTTATgactataatgtgtgtgtgtgtgttctctgacAGTCATCTGAACGCAGCGGTGCGCAGGTGTACAGCTCATCATCTCAGTGTTCTGCTGGAGCGTGTGGGTGCTGCTCGCCTGCTGAGCGGCGCTAAAGACGTGACAGAGCGACTGCTGCCCGCCGTGGCCAAGCTGGCGCAGGACTCCAGTCAGGAGGCCAGGTGAGCTCATTAGCATATATTTACTTCTGCATGTTTAGCAGGAGCTGAGGAGGTCATCCTCTCCTGTTCCTCATTGGCTGGAAGCGCTGCTTTATTCACTGTGTTGTAGGCCATATTAGTATGTAATCAGCCTGtctaatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaggtacTTCGGCCGGCGGATGCTGCTGTTTCTCTCCTCTCACCGTGACTTTGATAAGATGATGGAGAAGTTTATTCCTGCGAAAGACCTGCCGGCCCTCAGAGACGCCGTCTTCACCCTCAAAACCAAGGTgtgcacaaaacacacactcatcagATCACTACGGCGCTAATAATAAGGTCATATTTGTGTAGGAAGACTCTTCTGCTCACCGATGACGCCTTCGTTTGATTAAAGTCAGCGTGACAGCAGAATGACCATGTTGATTTCACTGGCACACAAGGCTATTCTGCTGCCTGTGGAGTGAGGCTCCTtctgttgtcgtgggtttccatAGCAACTTTATAATAATAtccttaaccacgccccttttaCCATTAGTTTACAAGAGAGATGtgcaaaagaaagccccacccacttctcaatattcagtttcaattGGAAATGCTTCAACATGCTGAAGTAAGCCCCGGCTAGTTGCAGTTCACGCAGACTCTGAATACATACTGCCAGTCAGTGGGCGTGTCTTTCGATCAGTGGGTGTGTCTTTCAAACAGTGGGTGTGTCTTTCAAACAGTGTCTATGTGGGTGTGTCTGTTAGTAAGTGGGCGTGTCTGGACAGAGGGTGTGTCTATGTGGGTGTGTCTGTTAGTAATTGGGCGTGTCTAGACAGAGGGTGTGTCTATACGGGTGTGCCTGTTAGTAAGTGGGTGTGTCTCAGTAAGTGGGTGTGTCAGGACAGAGGGTGTGTCTATAGACGAATCTATGTCCATCAGTGGGCATGTTTGGACAGGAGGTGTGTCTATGTGGGTGTGTCTGTCAGTGGGTGTATCCAGACAAAGGGCGTGTCTATTAGGGCGTGTCTGTCAGTCAGTGGGTGTGTCAGGTCAaagagtgtgtctgtgtgggtgtgtctgtCAGTGAGTGTGTCAGGACAAAGGGCGTGTCTATTAGGGCGTGTCTGTCAGTCAGTGGGTGTGTCAGGACAAAGGGCGTGTCTATTAGGGCGTGTCTGTCAGTCAGTGGGTGTGTCAGAACAaagagtgtgtctgtgtgggtgtgtcaGGAATAAGGGTGTGTCCATTAGGGCGTGTCTATTAGCCAGTGGGTGTATCTCGGTAAGTGGGTGTGTCAGGACAGAGGGTGTGTCTTTAGACAAATCTTTGTCCATCAGTGGGCGTGTTTGGACAGGAGGTGTGTCTATGTGGGTGTGTCTGTCAGTCAGTGGGTGTGTCAGGACAGAGGGTGTGTACATGTGGGTGTGTCTGTTAGTCAGTGGGTGTGTCTTGACAGAGGGTGTGTTTATGTGGgtgtgtcagtcagtcagtgggtGTGTCAGGACAGATAATGTGTATATATGGGTGTGTCTGTTTAGTCAGTGGGTGTGTCAGAGACAGAGGGTGGTTTATGTGGGTGTGTCTGTTGTCAGTGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacacacacacagactcactctcacacacacacactcatgagtGTGTGTCCAGCAGGGATCCGTCTCTCAGTAAAGCGTGCGCTCACAGTCTGGCAGAGCGCAGCGAGTACGTCAAGCAGATGAAGACGCTCCTCAACTCCAGAGACTTCAGGGAGAGGATGAAGGCCATCGATCAGCTGGTGTGTGACTGTGAGGAAAACCCAGCTCTGGTCATCGGCAGCCTGTTcccggtacacacacacacacacactcatcacatGCTCTGAAGAAACACTCTAGCAGCTTCTGGAAATCAATAGAGGTGCTCTTTCTTCCTCACTGGAGCTTTAATCCCGCTAATGACTGAAAGTGTAACGAGCATAGATGTAGAATATATAGACTGCTGCAGTATGGGAAGCTCCCGTCTGCATGATcttctaataattcaatgtttaaatACCAATTCTTTACATACATGTGGAGTGTAACAGATGTTGATGCTGTTTTACATGCTGAAAAGCCCAACACACATAACACCTGCAGGTTTGAGCTGatgctgtgtgtgttgtgctgcagGTGTTTGACTGTCTGAAGGCGCGTCTGCAGGAGTCTAACAGTAAGGTGAATCTGCGCGCTCTGGAGGCTCTGCACTCCATCATCACTCTGCTCAGAGATCATCTTTCTCCAGTGCTCAACATCCTCATCCCGGCGCTCGTGGACAATCACCTCAACTCCAAAAACACACTCGTCTACACGGCGGCGCTGGCGGCACTGCAGGCCCTCACACACAACATCGGTCAGTGCTACACAACTACATCATTCACCACAGCTATCAGTGCTTAAAGGCAGGACtatctatcagtcatttagggcggggctatcagtcatttagggcggggctatcagtcatttagggcggggctatcagtcatttagggtgggggtattagtaatttagggtggggctatcagtcatttagggcggggctatcagtcatttaggacggggctatcagtcatttagggcggggctattagtcatttagggtggggctatcactattttagggtggggttatcagtgatttagggcagggctatcagtgatttagggcagggctatcagtgatttagggcggggctatcagtcatttagggtggggctattagtaatttagggtggggctatcagtcatttagggtggggctatcagtcatttagggcggggctatcagtcatttaggacggggctatcagtcatttagggcggggctattagtcatttagggtggggctatcactattttagggtggggttatcagtgatttagggcagggctatcagtgatttagggcggggctatcagtcatttagggaggggtatctgtcatttagggtggggctattagccatttagggtggggctatcagccatttagggtggggctatcagtcatttagggcggggctatcagtcatttagggtggggttatcagtcatttagggcggggctatcagtcatttagggccggctatcagtaatttagggcggggctatcagtcatttagggtggggctatcagtaattttgggtggggctatcagtgatttagggtggggctatcagtcatttagggcggggctatcagtcatttagggtggggttatcagtcatttagggcggggctatcagtcatttagggccggctatcagtaatttagggcggggctatcagtcatttagggtggggctatcagtaattttgggtggggctatcagtgatttagggtggggctatcagtcatttaggacgggactatcagtcatttagggtggggctatcagtcatttagggcggggctatcagtcatttagggtggggctatcagtcatttagggcggggctatcagtgatttagggtggggttatcagtaatttgtggtggggctatcagtaatttatggtggggctatcagtaatttagggtggggctatcagtgatttaggatgggactatcagttatttagggcggagctatcagtccttaagCATTACATCACCTTAAATGAAAGTCCTACTGCTGGAGTGTTTTAACCTCTACATGagtgtgtgttcagcagtgtgTTGAgctgtgtttcagtgtgtgttgACTGTAGTGactctgtgtgtgtttcagacaaCAGTCTCCTGCTGCAGCCCTTCTGCTCTAAAGCACAGTATCTGAGCGGGAAAGCAAAGCTGGACCTGATCGAGAAAGTAGCAGGTGAGTCTGGAGGAGCTTtatcagaataataataataataatgtatttttgttgatcATGAGTGTGTGTTATCAGATCTGGTGCTAAATCTGTGTCGCAGTGTGTGTCTATGTAAATCAGTGTGAACCTGCTGTGTtaatcatcagtgtgtgtgtgtgtgtgtgtgtggcagaggTGGTGTGTGACCTGTATCCCCGCAGGCCTCAGCTGGTGGAGCAGAAGACTCTCCCTCTGCTGTGGACTCTGCTGGGCTCTTGCAGTGCT
>TCONS_00022322
GAGTGTTTGGCTCTGCGGTTCTGCCCAGTCGGCCCAGTGTTTCTGCTTCCCCTGAGCAGAGTGACGCGGTCAGCAGAGCAGATCCTCCGTCAGGGGTGTACGGACACGCTTTCTCCAGCAAACACACAGACTCGGACGCCAGTCCTGAACCACAGCAGCTGCAGgaGAAGGTGAAACTGTGTAAGTTTGCGAGTGAGAAGATGCGTCAGCAGCGTGTGGAGCAGCAGGAGCCAATTAAACGCGACGATAcacatgatgaagatgaagacgaTGATGTGAAAGGTGGAAGTGAACTACActgatgtgtgtgcgtgtgtttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatgtttgtgtgtgtctgctgacagtatgtgtgtgtgtatgtgtgtgtgtgtcagtatatTTGTatgttgactgtgtgtgtgtgtgtgtgtgtgtttgtgtcagtatatttgtgtatgtgtgtgtgtgtgtgtttgtgtctgtatatTTGTATGttgactgtctgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtttgtgtgtttgtgtctgtatatttgtgtgttgactgtgtgtgtgtgtgtctgtctgtctgtctgtctgtatatttgTGTTGactgtgcgtatgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtatatttgtgttgactgtgtgtgtatgtgtgtgttctagACGTCAACATGAACGGCTGTGAGTCTCCCTCAGATGAATCTCCCTCCAGCCCTAACGGACCAATCAAAAGCATCAGCCCCGCCCATCAGCCCGCCCCTCCGACTGGACCGCCCAATAGAACCACAGTGCCGCGACTCAGACGAGCATCTAGTCTGAACAGAAGCAGACCGGCTGCCACACACAGCTGCGATGAGCTGGTTTCTGGCAGTCCTAAGAAGGAGTCTCAGGATCAGCTGGAGCTGCGGCCGTTCTCTAAACCGGAGCTGGCGCTGACGCAAAGCTTCAGACTGACCGCTGCAGACGACTGGGAGAAGAAGATCGAGGGCATGAACATGCTGCGCAGTCTGGCTCAGTATCATCCTGATGTGCTGATGAGCCGCATTCATGACGTGTGTCTCGCTCTCATTCAGgaggtgcgtAACCTGCGCTCCGGCGTGTCCCGTGTTGCCGTGGTGACCCTGGGCGAGATGTTTGCGTCCCTGCAGAAGGGGATGGATCAGGAGCTGGACGCACCGGTGCGAGCGCTGCTGCATAAAGCTGGAGAATCCAACGGCTTCATCCGCACAGACGTGGAGCGCGCGCTGGACAGCCTGACacaacactgcacacacacacgctgcatACACGCACTGCTGGCCGGAGGACTCGGGTCAggaaacactctctctctctctgtgtgtgtgtgcttacctCCAGTGTTTATgactataatgtgtgtgtgtgtgttctctgacAGTCATCTGAACGCAGCGGTGCGCAGGTGTACAGCTCATCATCTCAGTGTTCTGCTGGAGCGTGTGGGTGCTGCTCGCCTGCTGAGCGGCGCTAAAGACGTGACAGAGCGACTGCTGCCCGCCGTGGCCAAGCTGGCGCAGGACTCCAGTCAGGAGGCCAGgtacTTCGGCCGGCGGATGCTGCTGTTTCTCTCCTCTCACCGTGACTTTGATAAGATGATGGAGAAGTTTATTCCTGCGAAAGACCTGCCGGCCCTCAGAGACGCCGTCTTCACCCTCAAAACCAAGGTgtgcacaaaacacacactcatcagATCACTACGGCGCTAA
>TCONS_00022323
ATGTGGGTGTGTCTGTCAGTCAGTGGGTGTGTCAGGACAGAGGGTGTGTACATGTGGGTGTGTCTGTTAGTCAGTGGGTGTGTCTTGACAGAGGGTGTGTTTATGTGGgtgtgtcagtcagtcagtgggtGTGTCAGGACAGATAATGTGTATATATGGGTGTGTCTGTTTAGTCAGTGGGTGTGTCAGAGACAGAGGGTGGTTTATGTGGGTGTGTCTGTTGTCAGTGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacacacacacagactcactctcacacacacacactcatgagtGTGTGTCCAGCAGGGATCCGTCTCTCAGTAAAGCGTGCGCTCACAGTCTGGCAGAGCGCAGCGAGTACGTCAAGCAGATGAAGACGCTCCTCAACTCCAGAGACTTCAGGGAGAGGATGAAGGCCATCGATCAGCTGGTGTGTGACTGTGAGGAAAACCCAGCTCTGGTCATCGGCAGCCTGTTcccgGTGTTTGACTGTCTGAAGGCGCGTCTGCAGGAGTCTAACAGTAAGGTGAATCTGCGCGCTCTGGAGGCTCTGCACTCCATCATCACTCTGCTCAGAGATCATCTTTCTCCAGTGCTCAACATCCTCATCCCGGCGCTCGTGGACAATCACCTCAACTCCAAAAACACACTCGTCTACACGGCGGCGCTGGCGGCACTGCAGGCCCTCACACACAACATCGGTCAGTGCTACACAACTACATCATTCACCACAGCTATCAGTGCTTAAAGGCAGGACtatctatcagtcatttagggcggggctatcagtcatttagggcggggctatcagtcatttagggcggggctatcagtcatttagggtgggggtattagtaatttagggtggggctatcagtcatttagggcggggctatcagtcatttaggacggggctatcagtcatttagggcggggctattagtcatttagggtggggctatcactattttagggtggggttatcagtgatttagggcagggctatcagtgatttagggcagggctatcagtgatttagggcggggctatcagtcatttagggtggggctattagtaatttagggtggggctatcagtcatttagggtggggctatcagtcatttagggcggggctatcagtcatttaggacggggctatcagtcatttagggcggggctattagtcatttagggtggggctatcactattttagggtggggttatcagtgatttagggcagggctatcagtgatttagggcggggctatcagtcatttagggaggggtatctgtcatttagggtggggctattagccatttagggtggggctatcagccatttagggtggggctatcagtcatttagggcggggctatcagtcatttagggtggggttatcagtcatttagggcggggctatcagtcatttagggccggctatcagtaatttagggcggggctatcagtcatttagggtggggctatcagtaattttgggtggggctatcagtgatttagggtggggctatcagtcatttagggcggggctatcagtcatttagggtggggttatcagtcatttagggcggggctatcagtcatttagggccggctatcagtaatttagggcggggctatcagtcatttagggtggggctatcagtaattttgggtggggctatcagtgatttagggtggggctatcagtcatttaggacgggactatcagtcatttagggtggggctatcagtcatttagggcggggctatcagtcatttagggtggggctatcagtcatttagggcggggctatcagtgatttagggtggggttatcagtaatttgtggtggggctatcagtaatttatggtggggctatcagtaatttagggtggggctatcagtgatttaggatgggactatcagttatttagggcggagctatcagtccttaagCATTACATCACCTTAAATGAAAGTCCTACTGCTGGAGTGTTTTAACCTCTACATGagtgtgtgttcagcagtgtgTTGAgctgtgtttcagtgtgtgttgACTGTAGTGactctgtgtgtgtttcagacaaCAGTCTCCTGCTGCAGCCCTTCTGCTCTAAAGCACAGTATCTGAGCGGGAAAGCAAAGCTGGACCTGATCGAGAAAGTAGCAGGTGAGTCTGGAGGAGCTTtatcagaataataataataataatgtatttttgttgatcATGAGTGTGTGTTATCAGATCTGGTGCTAAATCTGTGTCGCAGTGTGTGTCTATGTAAATCAGTGTGAACCTGCTGTGTtaatcatcagtgtgtgtgtgtgtgtgtgtgtggcagaggTGGTGTGTGACCTGTATCCCCGCAGGCCTCAGCTGGTGGAGCAGAAGACTCTCCCTCTGCTGTGGACTCTGCTGGGCTCTTGCAGTGCT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048854 brain morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0032502 developmental process biological_process
GO:0007418 ventral midline development biological_process
GO:0021508 floor plate formation biological_process
GO:0009790 embryo development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022321 False 5465 lncRNA 0.50 7 634641 647813
TCONS_00022322 False 1806 lncRNA 0.54 6 635247 643937
TCONS_00022323 True 2521 lncRNA 0.48 2 644968 647813

Neighbor

gene id symbol gene type direction distance location
XLOC_011148 CABZ01118763.1 coding upstream 13964 620561 ~ 620677 (+)
XLOC_011147 C17H14orf28 coding upstream 44868 584369 ~ 589773 (+)
XLOC_011146 CABZ01064929.1 coding upstream 137916 496611 ~ 496725 (+)
XLOC_011145 zgc:194887 coding upstream 178183 450956 ~ 456458 (+)
XLOC_011144 EMC7 coding upstream 188721 443264 ~ 445920 (+)
XLOC_011150 CABZ01079748.1 coding downstream 6946 654759 ~ 686887 (+)
XLOC_011151 fancm coding downstream 43640 691453 ~ 702817 (+)
XLOC_011152 slc25a47b coding downstream 81610 729423 ~ 730986 (+)
XLOC_011153 NA coding downstream 131447 779260 ~ 807841 (+)
XLOC_011154 CABZ01085623.1 coding downstream 155778 803591 ~ 803706 (+)
XLOC_011142 BX511111.1 non-coding upstream 255489 376891 ~ 379152 (+)
XLOC_011141 NA non-coding upstream 260508 338129 ~ 374133 (+)
XLOC_011140 LO018437.1 non-coding upstream 369354 265173 ~ 265287 (+)
XLOC_011155 CABZ01100214.1 non-coding downstream 189136 836949 ~ 837063 (+)
XLOC_011157 NA non-coding downstream 299200 947013 ~ 948887 (+)
XLOC_011162 NA non-coding downstream 656439 1304252 ~ 1317425 (+)

Expression


Co-expression Network