CI01000110_01422600_01428949 (SELT2)


Basic Information

Item Value
gene id CI01000110_01422600_01428949
gene name SELT2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 1421628 ~ 1428949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000110_01422600_01428949.mRNA
AGTGGCGTGCTGGAGCTGAAATGCGTTGATGACACACGGCACCCAGTAGATGTCGCTGTTTACACGTTCTCCATCATGACTCAGCCAGTACGCTCGTTCGGCGGCGGCGGTAGTAGGGTACTGTGGGCTTGGTTCTGTCGCTGTGGACGGGCCGGAGATGGCGGAGTACAGCCAGACGGGTATATTAACGGCCCTGCTGCTGTTTACTGTGGTAACACTGAGGGATATTTATGTGGGCCGCAACAGCATGACTCAACAAGACAGCGCCGGACCCGACATGCTCACACAGAGACCGAACAAACACACATTCTACACGGGTCCGGTTCTCAAGTTCCAGTTCTGGAGTACTCCCGGTCCATCAGCCAGCTGTACCCAGACATCCGAATTGAGGGAGAGAATTACCCTCCCAAACCCATCAACAAATATCTAGGCAACTTCATCTCCTATTTCAAACTCCTTGCCATTGCTTTGATTGTGACTGGACAAAATCCTTTCCAAATGTTTGGAATGAACACTCCAAGAATATGGTTCTGGGGACAGGAGAATAAGATTTTCTCCTGCCTTATGGCATTCTTCCTTAGTAACATGTTGGAGACCCATTTCCTCTCGACAGGAGCTTTTGAGATTACATTGAATGGTCTCCGGAGCTGTTTCTCTAGTCAGCGGGACTGTAGACTGTGGCATAATGAAGGCCTGCGCTGCAAACAGCACACTGTGAGCGCAGACTGGATGCTCGGCCACCACACACACTCCTTCTGCCCGGCGACACACACCTTTGGATCGACTACATCTCTTCAGAGCATCAAGCTTCATGCATTTGTAGTAGGAGAGTCACATGAGAGCTAAAGGCACTACATTTATTACTGAATGCTGAAGTTAGGGTTTTTTTTTGTTTTTGTTTTGTTTTTTTGGCCAGGGTAGTTCTGTTTGTAATTGAAATCGAATGGAATGTTCCATCTTTCTCAAGGGCAACTGTGATGTTTTCTTAATGTAAATGTCTTTAAATGACCTTTAACATGATCATGTGTTTGCACTGGTTTAGACTGTACTGTACTCGGGGTAGGCCTATCTGACTTTTTTTTAATTAGTGAGAATGTTTGTGTACTGCAGAATCATGCAGTTTTGTTAGAGTGAGCTTAAATGAGTTTAACTGAGTTTAAATGCTTGAAGTGGTACATTTTTGTTGTGTTTGTCACAGGTTCGCTGGTTAGATTCATAAGCACTGCTTGTGTTTATTGAGGGAATTATTAAGGCCAGATCTTCTTCTGCTTAGACTTGCCAGAGCACTGCCAGAGTAATCTGTGGAATTGTTTTAATGATGGTGTGATTGAGAGTGTTGCATATCAGAAGATGTGAATGGGAATTCCAAAGACAGCCTGTATTTTTCCAGCTCTCTCCATATAGACATGGCGGCAAGCAATGTACCCCTTATATTTTAGCGTACCTCTCTGTGAATTTGTAACAACAGTGATACCGATAGTTGGGATTAAGTTGCATTGAGAAAATATATTTTACTTTGTTTCACAGTGATGTAAAATCAAGATTCCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000110_01422600_01428949.mRNA False 1553 mRNA 0.44 6 1421893 1428949

Neighbor

gene id symbol gene type direction distance location
CI01000110_01135230_01139236 AP1AR coding downstream 282657 1135131 ~ 1139236 (-)
CI01000110_01126191_01127662 NA coding downstream 294231 1125835 ~ 1127662 (-)
CI01000110_01112020_01115441 NA coding downstream 306311 1111926 ~ 1115582 (-)
CI01000110_00929399_00931607 NANOS1, NANO1 coding downstream 490168 929146 ~ 931725 (-)
CI01000110_00779093_00781105 LBX2 coding downstream 640237 778574 ~ 781656 (-)
CI01000110_01432049_01434499 RAB33A coding upstream 2756 1431705 ~ 1434499 (-)
CI01000110_01436253_01450759 NA coding upstream 7256 1436205 ~ 1450759 (-)
CI01000110_01864492_01865547 NA coding upstream 435529 1864478 ~ 1865547 (-)
CI01000110_01988105_01990600 SLITRK4 coding upstream 557640 1986589 ~ 1991741 (-)
CI01000110_02794268_02794597 NA coding upstream 1365233 2794182 ~ 2794597 (-)
G323342 NA non-coding downstream 2247 1419346 ~ 1419646 (-)
G323274 NA non-coding downstream 74580 1282046 ~ 1347313 (-)
G323149 NA non-coding downstream 171813 1243849 ~ 1250080 (-)
G323125 NA non-coding downstream 246376 1175311 ~ 1175517 (-)
G323124 NA non-coding downstream 246812 1174860 ~ 1175081 (-)
G323346 NA non-coding upstream 27463 1456412 ~ 1456691 (-)
G323388 NA non-coding upstream 90810 1519759 ~ 1520020 (-)
G323395 NA non-coding upstream 106635 1535584 ~ 1536004 (-)
G323559 NA non-coding upstream 325600 1754549 ~ 1754759 (-)
G323581 NA non-coding upstream 352050 1780999 ~ 1781243 (-)
G323133 NA other downstream 185044 1205829 ~ 1236849 (-)
G322580 NA other downstream 1316074 103265 ~ 105819 (-)
G324936 NA other upstream 1686509 3013673 ~ 3120099 (-)

Expression


Co-expression Network