CI01000110_03095980_03103572 (RNF20)


Basic Information

Item Value
gene id CI01000110_03095980_03103572
gene name RNF20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3095456 ~ 3103572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000110_03095980_03103572.mRNA
AATGACGAGGTATCCTTGCAGCGCAAAGTCCGTACTGAAGTGATTCAGTTGGAAGACACGTTAGCACAGGTGCGCAAGGAGTATGAGATGCTCAGGATCGAATTTGAGCAGACATTAGCTGCTAATGAACAAGCAGGTCCTATAAACCGTGAGATGAGACATTTGATCAGTACACTGCAGACTCATAACCAGCAGATGAAGGGAGAGCTCCGTGCTGCCAAAGGTAATGCTGCTGTCCAATCACAGTCCAGCACAGAGATGGATGTGAAGGAAGAGACCGCCTCCCCGCTTACGCCTGCCCCGACGGGTGACGTTACTGTGAAGACAGAACCAGATAGCGGTTCTGCCACACCCAGCACAACTGGTGCAACTGTTAAGACTGAACCGGGTACGGACACGGAGACTGCGAGAGAAAGGGTGACTCGTGGGAGTACTGGGGGTGTAGTGGTGAAAGAAGAAAGGGAGAAAGCCAGCACCAGCAGCAGCCAATCAGAAGACCTAGCAGTTGAACGCTGTGCTATGATTGGAGGACCAAAACGCAAGGAGGTGGAGCAGCTGAAAATAGTGCGAGTGGAGCTCAAGAAAGCCCAAGAGTCCCAGAGGGAGATGAAGCTGTTGTTGGACATGTACCGCTCAGCACCGAAAGAACAGAGAGATAAAGTACAGCTGATGGCAGCAGAGAAGAAGGCAAAGTCTGAGGCTGAGGAGCTCCGGCAGCGGTTGCGAGAGCTGGAGGAGAGAGAGAGGAGGGAGGGAAAGAAGATGGCAGACGAAGAGGCCCTGAGAAAGATCCGCTCAGTGGAGGAGCAGATCGATATACTCAATAAGAAACTCTCTCTTGCTAAGCAGGAGGAAGATGCTTTGCTGAGTGAAATGGATGTTACTGGTCAGGCGTTTGAAGACATGCAGGAGCAGAACATTCGTCTGATGCAGCAGCTCAGAGAGAAAGATGATGCCAACTTCAAACTCATGAGCGAACGCATCAAATCCAACCAGATCCATAAACTCCTCAAGGAAGAGAAAGAGGAGCTAGCTGACCAGCTGCTCACACTTAAAACACAGGTGGATGCTCAGCTGCAGGTGGTTCGGAAGCTAGAAGAGAAAGAGCGCCTGCTGCAGGGCACCATCAGCGCTGCAGAAAGGGAGCTGGGTCTTCGCACACAGGCATTAGAAATGAACAAACGCAAGGCGCAGGAGTCAGTGCTGCTATCAGAGGAGGTGCGCACTCAGCTGGAGGGGGTGCAGCAGAGGTTGAGTGCGGTCAGAGAGGAGGTGGTTGAGAACAGCATCTCTCGAGAGAAAGAGTCTTTCAATGCCCGACGTGCACAGGAGGACATTTCCAAGCTGCGCAGGAAGATAGAGAAGGCCAAGAAACCTGCAGAGAACATTCGAAATGGAGATGAGATCCTGAATGAAGAAATAAACGAATACAAGGCCCGGTTGACGTGTCCATGCTGTAATTCACGTGTAAAGGACGCTGTTTTGACAAAGTGCTTCCACGTTTTCTGTTTTGAGTGCGTGAAGACGCGCTACGACACCCGTCAGAGAAAGTGCCCGAAGTGCAATGCTGCATTTGGTGCCAATGATTTCCATCGCATCTACATTGGATGAGACTTATGTTTCACGGTATCTGCATCTGTTTGGTCCAGTTCCTCAACATTGTTCTGCGGGTGGAGCTTGTCCTGTAATGTTGAGTGAACATCAACAGTTTTACATTCCATTTGAAATTACTTTACAGAAAACAACCAACATGTTCAGTAGATGTTCTAGCATGGGTTTAGCAGAACTAACCTGGTCACATTCCACAGGTCTGCCTTAGCAAGCATTTTTCACTCATAAAAGCTGCTGCTTGCTTTCAGGAGTGTCCTGAATGTTTGTTGACTTCTTTTGAGTTAATACTGCCTCGACCAGATCTCCCATTCCACCTCAACTTTACATTTACTACCCAGAGCCAATGTGAACCCATCAACATTAGTGAGTCTACAGACCTGTCATTGAAAACAAGCTGCCTAGTCGACTGGGCAGTAGTTCATTTGCGTTCATTTAGCTGAACAACTGGTATTGAAATTTTTGTACTGTCTGTTTTGACTGCCTACAGTGATGGTTGTGCAACTGCTTCATTGAAATTCATTAAA

Function

symbol description
rnf20 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to act upstream of or within histone monoubiquitination. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human RNF20 (ring finger protein 20).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10696 BRE1; E3 ubiquitin-protein ligase BRE1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000110_03095980_03103572.mRNA True 2135 mRNA 0.49 12 3095456 3103572

Neighbor

gene id symbol gene type direction distance location
CI01000110_03084686_03087106 NA coding downstream 8350 3084439 ~ 3087106 (-)
CI01000110_03015589_03024689 IDS coding downstream 70095 3015250 ~ 3025361 (-)
CI01000110_02890041_02906679 NA coding downstream 187237 2889879 ~ 2908219 (-)
CI01000110_02794268_02794597 NA coding downstream 300859 2794182 ~ 2794597 (-)
CI01000110_01988105_01990600 SLITRK4 coding downstream 1103715 1986589 ~ 1991741 (-)
CI01000110_03122088_03123095 NA coding upstream 18091 3121663 ~ 3123095 (-)
CI01000110_03138199_03142034 NA coding upstream 33708 3137280 ~ 3142354 (-)
CI01000110_03152754_03157924 MAEA, MAEA.S coding upstream 48893 3152465 ~ 3157924 (-)
CI01000110_03196898_03206968 PPP2R2C coding upstream 92610 3196182 ~ 3206968 (-)
CI01000110_03220300_03222003 NA coding upstream 116248 3219820 ~ 3222003 (-)
G324960 NA non-coding downstream 61990 3027257 ~ 3033466 (-)
G324939 NA non-coding downstream 63437 3031014 ~ 3032019 (-)
G324909 NA non-coding downstream 135619 2953232 ~ 2959837 (-)
G324919 NA non-coding downstream 199368 2894481 ~ 2896088 (-)
G325013 NA non-coding upstream 21836 3125408 ~ 3125846 (-)
G325019 NA non-coding upstream 39944 3143516 ~ 3143879 (-)
G325020 NA non-coding upstream 40360 3143932 ~ 3144335 (-)
G324978 NA non-coding upstream 43948 3147520 ~ 3200136 (-)
G325046 NA non-coding upstream 155136 3258708 ~ 3258939 (-)
G323133 NA other downstream 1858607 1205829 ~ 1236849 (-)
G322580 NA other downstream 2989637 103265 ~ 105819 (-)
G324936 NA other upstream 11886 3013673 ~ 3120099 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015618 NA coding CM030132.1 CM030132.1 14104328 ~ 14112925 (+)