CI01000110_03583086_03590983 (STX3, STX2, STX3A)


Basic Information

Item Value
gene id CI01000110_03583086_03590983
gene name STX3, STX2, STX3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3583014 ~ 3590983 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000110_03583086_03590983.mRNA
ACATGCGATCATGATGACGAAGACGTTGAGATCGCCGTGGACAATGCTGCTTTTATGGATGAGTTCTTCGGCCAGGCATGTTCTTCTATTGAAGACATCAGGAACAGCATTGATAAGATTGATGAGAATGTGGCCGAAGTGAAGAAACTTTACTCAGTTATTCTTTCTGCACCAACGTCAGACCAGAAAACGCAAGATGATTTGGAGGCGCTAACTAATGACATCAAGAAAATGGCCAACAATGCTCGTAACAAACTGAAGACCATTGAAAGGAATCTCGAGGCAGAAGAAGCGGAAAGATTATCGGCCGACATGAGAATACGCAAATCACAGCACGCTGTTCTTTCCAGGAAGTTTGTTGATGTGATGACCAAATACAATGAAGCTCAGGTGGACTTCAGAGAGAAAAGTAAAGGTCGCATTCAGAGACAGTTAGAGATCACTGGTAAAGCCACGACTGATGAGGAGCTGGAGGAGATGCTGGAGGGAGGAAACGCAGCCGTTTTCACAGCAGGGATTGTGGATTCAGGGATCTCTAAACAAGCGCTAAGTGAGATTGAAGCACGTCACAAAGATATTGTGCGTCTGGAGAGCAGCATAAAGGAACTGCATGACATGTTTGTGGACATCGCCATGCTGGTGGAGAGCCAGGGCAACATGGTTGATAACATTGAGGTGAATGTGGGTAAAGCAGTCGATCACGTTGAAGCTGCAAAGACTGAAACCAAAAAAGCAGTCAGGTATCAGAGTAAAGCCCGGAAGATTCTCTGTACTGTGTCCAAACCCTATGACGTTACACTTAGAGTCAGACACAAACAAACTCAGTGATTAATACTAATCATGATACGCCCTGAAACTTCCCATCACAGGACTTCAGTGTATTTCAGCTAATGAAATAAA

Function

symbol description
stx3a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis; intracellular protein transport; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynapse; presynaptic active zone membrane; and synaptic vesicle. Predicted to be integral component of membrane.
stx3 Predicted to enable SNAP receptor activity; SNARE binding activity; and arachidonic acid binding activity. Involved in several processes, including positive regulation of cell adhesion; positive regulation of cellular protein localization; and positive regulation of chemotaxis. Located in several cellular components, including apical plasma membrane; lamellipodium; and secretory granule.
stx2 Enables identical protein binding activity and structural molecule activity. Involved in cellular response to oxidative stress and cornified envelope assembly. Located in basolateral plasma membrane; extracellular space; and lamellipodium. Part of protein-containing complex.

NR:

description
Zgc:165520 protein

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K08486 STX1B_2_3; syntaxin 1B/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000110_03583086_03590983.mRNA True 900 mRNA 0.44 9 3583014 3590983

Neighbor

gene id symbol gene type direction distance location
CI01000110_03560549_03575577 KDM2AB coding downstream 7437 3559847 ~ 3575577 (-)
CI01000110_03557901_03558151 NA coding downstream 24863 3557845 ~ 3558151 (-)
CI01000110_03543809_03557376 ANKRD13D coding downstream 25521 3543690 ~ 3557493 (-)
CI01000110_03523710_03531446 CTBP1, CTBP2 coding downstream 51568 3523340 ~ 3531446 (-)
CI01000110_03488751_03505468 SPON2, SPON2A coding downstream 77546 3487397 ~ 3505468 (-)
CI01000110_03605251_03608582 RAN-1, RAN, RAN.L, RAN1 coding upstream 13951 3604934 ~ 3608706 (-)
CI01000110_03611195_03618116 NDUFS8, NDUFS8B coding upstream 19957 3610940 ~ 3618153 (-)
CI01000110_03633137_03638227 RAD9A coding upstream 42110 3633093 ~ 3638227 (-)
CI01000110_03648076_03657222 P2RX3A coding upstream 57075 3648058 ~ 3657373 (-)
CI01000110_03669983_03685620 SSRP1A, SSRP1, SSRP1B coding upstream 78111 3669094 ~ 3685620 (-)
G325120 NA non-coding downstream 149046 3399750 ~ 3433968 (-)
G325113 NA non-coding downstream 201122 3381611 ~ 3381892 (-)
G325107 NA non-coding downstream 222824 3359976 ~ 3360190 (-)
G325094 NA non-coding downstream 237909 3344857 ~ 3345105 (-)
G325079 NA non-coding downstream 267825 3314950 ~ 3315189 (-)
G325149 NA non-coding upstream 19181 3610164 ~ 3610398 (-)
G325206 NA non-coding upstream 131447 3722430 ~ 3722643 (-)
G325162 NA non-coding upstream 173379 3764362 ~ 3765023 (-)
G325215 NA non-coding upstream 194313 3785296 ~ 3789585 (-)
G325216 NA non-coding upstream 201822 3792805 ~ 3793040 (-)
G324936 NA other downstream 462915 3013673 ~ 3120099 (-)
G323133 NA other downstream 2346165 1205829 ~ 1236849 (-)
G322580 NA other downstream 3477195 103265 ~ 105819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location