CI01000110_03633137_03638227 (RAD9A)


Basic Information

Item Value
gene id CI01000110_03633137_03638227
gene name RAD9A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3633093 ~ 3638227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000110_03633137_03638227.mRNA
TTGGCTCTTCGGTCGGTCAACTCTTCCCGGTCAGCCTTTGCCTGCTTCCTGTTGTCTCCTCTCTTCTTCCAGAGATATCAGACTCCATCAGACCAGGGCTTTCGCTGCAAAATCCCCATCAAGAGTGTTCAGGCTGTGTTCAAGTCCCTGTCGTCTCTGGATCGCTCTGTAGAAAAATGCCGTATTCAGTTGAACAGTGAAAAGAGTCGGCTGACTATAACTCTACACTGTAAACACGGGCTCTTGAAAACACATAATTTGTCCTTTCAGGACTGTGAGAGTTTGCAGGCCGTGTTTGATAAAGAAAGCTGTGCAAACGTGCTACAAGCTCAACCCAGGTTGATGGTGGATACAGTTCTGCATTTTCCTCCATCTCTGGAGGAGGTGAATCTGTCAGTGAGCAGTGATCGAGTGTGGCTCAGGAATCATGTGGAGGATGACGCAGACCCATCACGAGCAATGATGACTGAACTGTGTTTGAGCTCGGAGGAGTTTGATCATTTTTCCGTCAGCACTCAGACCAGCATCACCTTCTGCCTCAAAGAGCTCAGGGGTTTGCTTGTATTTGCCGAGTCATCTGGTCTTCCAATCTCTATGTATTTTGATGAGCCAGGCAGTCCAGTTATCCTGAGTGTAACAGACAGTGTTCTGGAGGCTAATTTTGTCCTCGCTACACTGTCAGAGGACTCGCATCCAAAGAACCATGTCAAATCCAACACAAAACACCCTGATGCTGAGCAACCACCAGACGACTTTATGAATGATGACATGGACTCATTTCTCATCGCCATGGAGACCAGCGAACTTCCTGGACCGTCACATGTACCCACATCCCCACCGCACCCCACCAATAACAGAAAGCACTCAGGCAGTGAAGAGGAGCAGGAGGAAGCACTTGCAGAAGGACCTCCCAACAAAAAGTTTTGTTCACTTTTCTTCGGTTCAGTTCTGCCCACTCCCTCTCAGCTGACCAATCAGACAATACAGAGCCAGGAAGTGCTCGCAAGTGACAGTGAAGATGAAAATCAGACAGAAACATCGTAACCGCCTCATCAATTGAACTCAGAAGTGAACAATGTGGAAAGAAA

Function

symbol description
rad9a Predicted to be involved in DNA integrity checkpoint signaling; DNA repair; and cellular response to ionizing radiation. Predicted to act upstream of or within DNA damage checkpoint signaling. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD9A (RAD9 checkpoint clamp component A).

GO:

id name namespace
GO:0030896 checkpoint clamp complex cellular_component

KEGG:

id description
K10994 RAD9A; cell cycle checkpoint control protein RAD9A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000110_03633137_03638227.mRNA True 1088 mRNA 0.48 9 3633093 3638227

Neighbor

gene id symbol gene type direction distance location
CI01000110_03611195_03618116 NDUFS8, NDUFS8B coding downstream 14940 3610940 ~ 3618153 (-)
CI01000110_03605251_03608582 RAN-1, RAN, RAN.L, RAN1 coding downstream 24387 3604934 ~ 3608706 (-)
CI01000110_03583086_03590983 STX3, STX2, STX3A coding downstream 42110 3583014 ~ 3590983 (-)
CI01000110_03560549_03575577 KDM2AB coding downstream 57516 3559847 ~ 3575577 (-)
CI01000110_03557901_03558151 NA coding downstream 74942 3557845 ~ 3558151 (-)
CI01000110_03648076_03657222 P2RX3A coding upstream 9831 3648058 ~ 3657373 (-)
CI01000110_03669983_03685620 SSRP1A, SSRP1, SSRP1B coding upstream 30867 3669094 ~ 3685620 (-)
CI01000110_03746371_03748513 NA coding upstream 107962 3746189 ~ 3748513 (-)
CI01000110_03766267_03768570 CETN1.S, CETN2, XCEN, CETN1 coding upstream 128010 3766237 ~ 3768570 (-)
CI01000110_03802977_03807616 FUT11 coding upstream 163964 3802191 ~ 3807616 (-)
G325149 NA non-coding downstream 22695 3610164 ~ 3610398 (-)
G325120 NA non-coding downstream 199125 3399750 ~ 3433968 (-)
G325113 NA non-coding downstream 251201 3381611 ~ 3381892 (-)
G325107 NA non-coding downstream 272903 3359976 ~ 3360190 (-)
G325094 NA non-coding downstream 287988 3344857 ~ 3345105 (-)
G325206 NA non-coding upstream 84203 3722430 ~ 3722643 (-)
G325162 NA non-coding upstream 126135 3764362 ~ 3765023 (-)
G325215 NA non-coding upstream 147069 3785296 ~ 3789585 (-)
G325216 NA non-coding upstream 154578 3792805 ~ 3793040 (-)
G325181 NA non-coding upstream 433096 4071323 ~ 4133401 (-)
G324936 NA other downstream 512994 3013673 ~ 3120099 (-)
G323133 NA other downstream 2396244 1205829 ~ 1236849 (-)
G322580 NA other downstream 3527274 103265 ~ 105819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location